Hb_000720_160

Information

Type -
Description -
Location Contig720: 187285-189069
Sequence    

Annotation

kegg
ID tcc:TCM_016210
description Elicitor-responsive protein, putative
nr
ID XP_012086964.1
description PREDICTED: C2 domain-containing protein At1g63220 [Jatropha curcas]
swissprot
ID Q0JBH9
description Elicitor-responsive protein 3 OS=Oryza sativa subsp. japonica GN=ERG3 PE=2 SV=1
trembl
ID A0A067JZN4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20631 PE=4 SV=1
Gene Ontology
ID GO:0005515
description elicitor-responsive protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55644: 187338-189120
cDNA
(Sanger)
(ID:Location)		 015_I16.ab1: 187439-189066 , 017_A17.ab1: 187494-189052 , 024_L11.ab1: 187371-187910 , 034_E06.ab1: 187378-189050 , 035_D02.ab1: 187371-189025 , 041_D01.ab1: 187365-187557 , 041_L02.ab1: 187455-189052 , 051_H03.ab1: 187365-187556

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000720_160 0.0 - - PREDICTED: C2 domain-containing protein At1g63220 [Jatropha curcas]
2 Hb_002809_130 0.1393235168 - - mads box protein, putative [Ricinus communis]
3 Hb_019516_020 0.1656044029 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002081_070 0.1724055729 - - PREDICTED: pyridoxal kinase [Jatropha curcas]
5 Hb_000484_020 0.1734022872 - - hypothetical protein CISIN_1g030884mg [Citrus sinensis]
6 Hb_002232_130 0.1767635103 - - -
7 Hb_027760_010 0.1792901414 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
8 Hb_001454_120 0.1826567512 - - conserved hypothetical protein [Ricinus communis]
9 Hb_017491_060 0.1888990556 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
10 Hb_002900_160 0.193265282 - - PREDICTED: immediate early response 3-interacting protein 1-like [Jatropha curcas]
11 Hb_143496_010 0.1965019565 - - PREDICTED: 40S ribosomal protein S3-3 [Glycine max]
12 Hb_003126_090 0.1984273912 - - Rop1 [Hevea brasiliensis]
13 Hb_000630_060 0.2000215711 - - PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Jatropha curcas]
14 Hb_001304_140 0.2000599578 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
15 Hb_010815_030 0.2008413153 - - PREDICTED: (-)-germacrene D synthase [Vitis vinifera]
16 Hb_001221_310 0.2010339775 - - sec61 gamma subunit, putative [Ricinus communis]
17 Hb_000934_250 0.2018768602 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
18 Hb_007441_300 0.2024346444 - - ATP binding protein, putative [Ricinus communis]
19 Hb_000679_300 0.2027151884 - - PREDICTED: uncharacterized protein LOC105637628 isoform X2 [Jatropha curcas]
20 Hb_012022_120 0.2031017335 - - PREDICTED: protein N-methyltransferase NNT1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000720_160 Hb_000720_160 Hb_002809_130 Hb_002809_130 Hb_000720_160--Hb_002809_130 Hb_019516_020 Hb_019516_020 Hb_000720_160--Hb_019516_020 Hb_002081_070 Hb_002081_070 Hb_000720_160--Hb_002081_070 Hb_000484_020 Hb_000484_020 Hb_000720_160--Hb_000484_020 Hb_002232_130 Hb_002232_130 Hb_000720_160--Hb_002232_130 Hb_027760_010 Hb_027760_010 Hb_000720_160--Hb_027760_010 Hb_007441_300 Hb_007441_300 Hb_002809_130--Hb_007441_300 Hb_029584_060 Hb_029584_060 Hb_002809_130--Hb_029584_060 Hb_017491_060 Hb_017491_060 Hb_002809_130--Hb_017491_060 Hb_002609_210 Hb_002609_210 Hb_002809_130--Hb_002609_210 Hb_003125_190 Hb_003125_190 Hb_002809_130--Hb_003125_190 Hb_003126_090 Hb_003126_090 Hb_002809_130--Hb_003126_090 Hb_019516_020--Hb_027760_010 Hb_029510_020 Hb_029510_020 Hb_019516_020--Hb_029510_020 Hb_002045_040 Hb_002045_040 Hb_019516_020--Hb_002045_040 Hb_001221_320 Hb_001221_320 Hb_019516_020--Hb_001221_320 Hb_000331_290 Hb_000331_290 Hb_019516_020--Hb_000331_290 Hb_002374_170 Hb_002374_170 Hb_019516_020--Hb_002374_170 Hb_000030_290 Hb_000030_290 Hb_002081_070--Hb_000030_290 Hb_005245_080 Hb_005245_080 Hb_002081_070--Hb_005245_080 Hb_001504_050 Hb_001504_050 Hb_002081_070--Hb_001504_050 Hb_150651_040 Hb_150651_040 Hb_002081_070--Hb_150651_040 Hb_002081_070--Hb_002045_040 Hb_003544_020 Hb_003544_020 Hb_002081_070--Hb_003544_020 Hb_002571_020 Hb_002571_020 Hb_000484_020--Hb_002571_020 Hb_012022_120 Hb_012022_120 Hb_000484_020--Hb_012022_120 Hb_000995_040 Hb_000995_040 Hb_000484_020--Hb_000995_040 Hb_000312_090 Hb_000312_090 Hb_000484_020--Hb_000312_090 Hb_000505_140 Hb_000505_140 Hb_000484_020--Hb_000505_140 Hb_000484_020--Hb_003126_090 Hb_000123_230 Hb_000123_230 Hb_002232_130--Hb_000123_230 Hb_006816_220 Hb_006816_220 Hb_002232_130--Hb_006816_220 Hb_000342_100 Hb_000342_100 Hb_002232_130--Hb_000342_100 Hb_002232_130--Hb_150651_040 Hb_005391_040 Hb_005391_040 Hb_002232_130--Hb_005391_040 Hb_002893_050 Hb_002893_050 Hb_002232_130--Hb_002893_050 Hb_028347_010 Hb_028347_010 Hb_027760_010--Hb_028347_010 Hb_000630_060 Hb_000630_060 Hb_027760_010--Hb_000630_060 Hb_027760_010--Hb_002045_040 Hb_000714_030 Hb_000714_030 Hb_027760_010--Hb_000714_030 Hb_027760_010--Hb_000123_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.9997 14.1789 86.3634 167.586 223.207 62.1008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
381.81 290.604 79.8095 56.6147 50.9017

CAGE analysis