Hb_017436_010

Information

Type -
Description -
Location Contig17436: 2636-3694
Sequence    

Annotation

kegg
ID tcc:TCM_043384
description DNA/RNA polymerases superfamily protein
nr
ID XP_007010075.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061FNI4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_043384 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017436_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_039548_010 0.1457542949 - - hypothetical protein RCOM_1685970 [Ricinus communis]
3 Hb_005946_030 0.177838137 - - ATP-binding cassette transporter, putative [Ricinus communis]
4 Hb_004958_030 0.2223860187 - - PREDICTED: uncharacterized protein LOC104904188 [Beta vulgaris subsp. vulgaris]
5 Hb_006501_030 0.2410185763 - - hypothetical protein POPTR_0006s17720g [Populus trichocarpa]
6 Hb_188382_010 0.2470604328 - - Ran GTPase binding protein, putative [Ricinus communis]
7 Hb_000067_020 0.247669913 desease resistance Gene Name: NB-ARC PREDICTED: inactive disease resistance protein RPS4-like [Jatropha curcas]
8 Hb_007761_050 0.2494507705 - - calcineurin-like protein [Hevea brasiliensis]
9 Hb_039305_010 0.252872322 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
10 Hb_001257_020 0.2586557652 - - -
11 Hb_000736_010 0.2633753083 - - PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
12 Hb_088496_010 0.2651187375 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
13 Hb_004297_030 0.2672262503 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
14 Hb_159085_010 0.2776756733 - - -
15 Hb_148262_020 0.2825927583 - - -
16 Hb_000003_770 0.284215185 - - -
17 Hb_030765_010 0.2844507648 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
18 Hb_000270_150 0.2871406619 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
19 Hb_000562_080 0.2877714263 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001017_120 0.2923515617 - - -

Gene co-expression network

sample Hb_017436_010 Hb_017436_010 Hb_039548_010 Hb_039548_010 Hb_017436_010--Hb_039548_010 Hb_005946_030 Hb_005946_030 Hb_017436_010--Hb_005946_030 Hb_004958_030 Hb_004958_030 Hb_017436_010--Hb_004958_030 Hb_006501_030 Hb_006501_030 Hb_017436_010--Hb_006501_030 Hb_188382_010 Hb_188382_010 Hb_017436_010--Hb_188382_010 Hb_000067_020 Hb_000067_020 Hb_017436_010--Hb_000067_020 Hb_039548_010--Hb_005946_030 Hb_039548_010--Hb_188382_010 Hb_039305_010 Hb_039305_010 Hb_039548_010--Hb_039305_010 Hb_039548_010--Hb_004958_030 Hb_159085_010 Hb_159085_010 Hb_039548_010--Hb_159085_010 Hb_005946_030--Hb_006501_030 Hb_005946_030--Hb_188382_010 Hb_000329_530 Hb_000329_530 Hb_005946_030--Hb_000329_530 Hb_056768_010 Hb_056768_010 Hb_005946_030--Hb_056768_010 Hb_004958_030--Hb_159085_010 Hb_003001_100 Hb_003001_100 Hb_004958_030--Hb_003001_100 Hb_002835_220 Hb_002835_220 Hb_004958_030--Hb_002835_220 Hb_004958_030--Hb_188382_010 Hb_000348_040 Hb_000348_040 Hb_006501_030--Hb_000348_040 Hb_015091_010 Hb_015091_010 Hb_006501_030--Hb_015091_010 Hb_063511_010 Hb_063511_010 Hb_006501_030--Hb_063511_010 Hb_000048_100 Hb_000048_100 Hb_006501_030--Hb_000048_100 Hb_001951_280 Hb_001951_280 Hb_006501_030--Hb_001951_280 Hb_015675_060 Hb_015675_060 Hb_188382_010--Hb_015675_060 Hb_030765_010 Hb_030765_010 Hb_188382_010--Hb_030765_010 Hb_002742_010 Hb_002742_010 Hb_188382_010--Hb_002742_010 Hb_029982_010 Hb_029982_010 Hb_188382_010--Hb_029982_010 Hb_000562_080 Hb_000562_080 Hb_188382_010--Hb_000562_080 Hb_000067_020--Hb_039305_010 Hb_000270_150 Hb_000270_150 Hb_000067_020--Hb_000270_150 Hb_000736_010 Hb_000736_010 Hb_000067_020--Hb_000736_010 Hb_000979_050 Hb_000979_050 Hb_000067_020--Hb_000979_050 Hb_003773_030 Hb_003773_030 Hb_000067_020--Hb_003773_030 Hb_008092_140 Hb_008092_140 Hb_000067_020--Hb_008092_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0920774 0.166172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.431622 0.169528 0 0 0

CAGE analysis