Hb_090065_010

Information

Type -
Description -
Location Contig90065: 4526-7056
Sequence    

Annotation

kegg
ID rcu:RCOM_2161170
description hypothetical protein
nr
ID XP_012075894.1
description PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID A0A067KQZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10900 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_090065_010 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
2 Hb_015586_010 0.1992590744 - - PREDICTED: flavonol sulfotransferase-like [Jatropha curcas]
3 Hb_012379_010 0.2090404134 - - -
4 Hb_000318_080 0.2696420043 - - PREDICTED: la-related protein 6C [Jatropha curcas]
5 Hb_002631_300 0.2709261511 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
6 Hb_003687_030 0.2778988851 - - protein phosphatase 2c, putative [Ricinus communis]
7 Hb_001117_120 0.2859288912 - - chloride channel clc, putative [Ricinus communis]
8 Hb_011972_010 0.2877324982 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007145_010 0.2935589999 - - ammonium transporter 3.1-like protein [Camellia sinensis]
10 Hb_003776_040 0.297455063 - - PREDICTED: RING finger protein 165-like isoform X2 [Populus euphratica]
11 Hb_005144_190 0.2978814391 - - hypothetical protein F383_09558 [Gossypium arboreum]
12 Hb_004241_010 0.3010330085 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
13 Hb_052764_070 0.3017329849 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
14 Hb_001376_060 0.3021850096 - - PREDICTED: probable serine/threonine-protein kinase abkC isoform X2 [Jatropha curcas]
15 Hb_019762_060 0.3024913097 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002983_110 0.3025442406 - - PREDICTED: uncharacterized protein LOC105634780 [Jatropha curcas]
17 Hb_089140_110 0.3083281129 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
18 Hb_153269_010 0.3083792557 - - hypothetical protein CICLE_v10029937mg [Citrus clementina]
19 Hb_001959_250 0.3123382651 - - hypothetical protein CARUB_v10015435mg [Capsella rubella]
20 Hb_097218_020 0.3130273717 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]

Gene co-expression network

sample Hb_090065_010 Hb_090065_010 Hb_015586_010 Hb_015586_010 Hb_090065_010--Hb_015586_010 Hb_012379_010 Hb_012379_010 Hb_090065_010--Hb_012379_010 Hb_000318_080 Hb_000318_080 Hb_090065_010--Hb_000318_080 Hb_002631_300 Hb_002631_300 Hb_090065_010--Hb_002631_300 Hb_003687_030 Hb_003687_030 Hb_090065_010--Hb_003687_030 Hb_001117_120 Hb_001117_120 Hb_090065_010--Hb_001117_120 Hb_118094_010 Hb_118094_010 Hb_015586_010--Hb_118094_010 Hb_001584_030 Hb_001584_030 Hb_015586_010--Hb_001584_030 Hb_002157_090 Hb_002157_090 Hb_015586_010--Hb_002157_090 Hb_001959_250 Hb_001959_250 Hb_015586_010--Hb_001959_250 Hb_009976_010 Hb_009976_010 Hb_015586_010--Hb_009976_010 Hb_004241_010 Hb_004241_010 Hb_012379_010--Hb_004241_010 Hb_012379_010--Hb_002157_090 Hb_001269_290 Hb_001269_290 Hb_012379_010--Hb_001269_290 Hb_012379_010--Hb_015586_010 Hb_000111_230 Hb_000111_230 Hb_012379_010--Hb_000111_230 Hb_052764_070 Hb_052764_070 Hb_000318_080--Hb_052764_070 Hb_097218_020 Hb_097218_020 Hb_000318_080--Hb_097218_020 Hb_000007_200 Hb_000007_200 Hb_000318_080--Hb_000007_200 Hb_000318_080--Hb_118094_010 Hb_001767_060 Hb_001767_060 Hb_000318_080--Hb_001767_060 Hb_000886_030 Hb_000886_030 Hb_000318_080--Hb_000886_030 Hb_003178_020 Hb_003178_020 Hb_002631_300--Hb_003178_020 Hb_002631_300--Hb_001767_060 Hb_000189_540 Hb_000189_540 Hb_002631_300--Hb_000189_540 Hb_101146_010 Hb_101146_010 Hb_002631_300--Hb_101146_010 Hb_003673_040 Hb_003673_040 Hb_002631_300--Hb_003673_040 Hb_000152_210 Hb_000152_210 Hb_002631_300--Hb_000152_210 Hb_001675_030 Hb_001675_030 Hb_003687_030--Hb_001675_030 Hb_003687_030--Hb_000886_030 Hb_001728_020 Hb_001728_020 Hb_003687_030--Hb_001728_020 Hb_172632_050 Hb_172632_050 Hb_003687_030--Hb_172632_050 Hb_028707_070 Hb_028707_070 Hb_003687_030--Hb_028707_070 Hb_000529_280 Hb_000529_280 Hb_003687_030--Hb_000529_280 Hb_001117_120--Hb_097218_020 Hb_002217_520 Hb_002217_520 Hb_001117_120--Hb_002217_520 Hb_001117_120--Hb_003687_030 Hb_062785_010 Hb_062785_010 Hb_001117_120--Hb_062785_010 Hb_001117_120--Hb_000318_080 Hb_139138_010 Hb_139138_010 Hb_001117_120--Hb_139138_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.96739 1.88351 1.18033 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.39089 2.67195 0 0.0101618 0.691181

CAGE analysis