Hb_000318_080

Information

Type -
Description -
Location Contig318: 67688-72705
Sequence    

Annotation

kegg
ID rcu:RCOM_0774180
description lupus la ribonucleoprotein, putative
nr
ID XP_012072450.1
description PREDICTED: la-related protein 6C [Jatropha curcas]
swissprot
ID Q9LHL3
description La-related protein 6C OS=Arabidopsis thaliana GN=LARP6C PE=3 SV=1
trembl
ID A0A067KTH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04881 PE=4 SV=1
Gene Ontology
ID GO:0005634
description la-related protein 6c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000318_080 0.0 - - PREDICTED: la-related protein 6C [Jatropha curcas]
2 Hb_052764_070 0.2172391009 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
3 Hb_097218_020 0.2244475393 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
4 Hb_000007_200 0.2326846989 - - PREDICTED: choline/ethanolaminephosphotransferase 1 [Jatropha curcas]
5 Hb_118094_010 0.2365461351 - - hypothetical protein POPTR_0011s06595g [Populus trichocarpa]
6 Hb_001767_060 0.2377059129 - - PREDICTED: sulfate transporter 4.1, chloroplastic-like isoform X1 [Jatropha curcas]
7 Hb_000886_030 0.2391302453 - - PREDICTED: uncharacterized protein LOC105113410 [Populus euphratica]
8 Hb_000175_260 0.2399102691 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]
9 Hb_001117_120 0.2421237401 - - chloride channel clc, putative [Ricinus communis]
10 Hb_002631_300 0.24340033 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
11 Hb_003673_040 0.2614259051 - - dynamin family protein [Populus trichocarpa]
12 Hb_029920_060 0.2635777653 - - PREDICTED: UPF0554 protein-like isoform X2 [Jatropha curcas]
13 Hb_001862_120 0.2680701327 - - PREDICTED: aspartic proteinase-like protein 2 [Jatropha curcas]
14 Hb_002205_170 0.2683124671 - - PREDICTED: uncharacterized protein LOC105649179 [Jatropha curcas]
15 Hb_153269_010 0.2690445228 - - hypothetical protein CICLE_v10029937mg [Citrus clementina]
16 Hb_090065_010 0.2696420043 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
17 Hb_000599_310 0.2705012424 - - PREDICTED: pleckstrin homology domain-containing family A member 8-like [Jatropha curcas]
18 Hb_000442_110 0.271542169 - - hypothetical protein POPTR_0010s18960g [Populus trichocarpa]
19 Hb_003911_030 0.2736642274 - - glutamate dehydrogenase, putative [Ricinus communis]
20 Hb_003178_020 0.2770453461 transcription factor TF Family: B3 conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000318_080 Hb_000318_080 Hb_052764_070 Hb_052764_070 Hb_000318_080--Hb_052764_070 Hb_097218_020 Hb_097218_020 Hb_000318_080--Hb_097218_020 Hb_000007_200 Hb_000007_200 Hb_000318_080--Hb_000007_200 Hb_118094_010 Hb_118094_010 Hb_000318_080--Hb_118094_010 Hb_001767_060 Hb_001767_060 Hb_000318_080--Hb_001767_060 Hb_000886_030 Hb_000886_030 Hb_000318_080--Hb_000886_030 Hb_133799_010 Hb_133799_010 Hb_052764_070--Hb_133799_010 Hb_052764_070--Hb_001767_060 Hb_001307_110 Hb_001307_110 Hb_052764_070--Hb_001307_110 Hb_014508_010 Hb_014508_010 Hb_052764_070--Hb_014508_010 Hb_093458_010 Hb_093458_010 Hb_052764_070--Hb_093458_010 Hb_154038_020 Hb_154038_020 Hb_052764_070--Hb_154038_020 Hb_001117_120 Hb_001117_120 Hb_097218_020--Hb_001117_120 Hb_002217_520 Hb_002217_520 Hb_097218_020--Hb_002217_520 Hb_153269_010 Hb_153269_010 Hb_097218_020--Hb_153269_010 Hb_001221_560 Hb_001221_560 Hb_097218_020--Hb_001221_560 Hb_003673_040 Hb_003673_040 Hb_097218_020--Hb_003673_040 Hb_021079_010 Hb_021079_010 Hb_097218_020--Hb_021079_010 Hb_012807_130 Hb_012807_130 Hb_000007_200--Hb_012807_130 Hb_004007_110 Hb_004007_110 Hb_000007_200--Hb_004007_110 Hb_001998_200 Hb_001998_200 Hb_000007_200--Hb_001998_200 Hb_000012_110 Hb_000012_110 Hb_000007_200--Hb_000012_110 Hb_029920_060 Hb_029920_060 Hb_000007_200--Hb_029920_060 Hb_000139_470 Hb_000139_470 Hb_000007_200--Hb_000139_470 Hb_005363_010 Hb_005363_010 Hb_118094_010--Hb_005363_010 Hb_004158_100 Hb_004158_100 Hb_118094_010--Hb_004158_100 Hb_001507_030 Hb_001507_030 Hb_118094_010--Hb_001507_030 Hb_001221_520 Hb_001221_520 Hb_118094_010--Hb_001221_520 Hb_015586_010 Hb_015586_010 Hb_118094_010--Hb_015586_010 Hb_001767_060--Hb_093458_010 Hb_001767_060--Hb_154038_020 Hb_003602_060 Hb_003602_060 Hb_001767_060--Hb_003602_060 Hb_001450_030 Hb_001450_030 Hb_001767_060--Hb_001450_030 Hb_015807_160 Hb_015807_160 Hb_001767_060--Hb_015807_160 Hb_003687_030 Hb_003687_030 Hb_000886_030--Hb_003687_030 Hb_001675_030 Hb_001675_030 Hb_000886_030--Hb_001675_030 Hb_000529_280 Hb_000529_280 Hb_000886_030--Hb_000529_280 Hb_172632_050 Hb_172632_050 Hb_000886_030--Hb_172632_050 Hb_004787_040 Hb_004787_040 Hb_000886_030--Hb_004787_040 Hb_000465_510 Hb_000465_510 Hb_000886_030--Hb_000465_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.243902 0.231794 0.616297 0.0252204 0.0249159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.229246 0.631264 0 0.0719223 0.283844

CAGE analysis