Hb_001014_020

Information

Type -
Description -
Location Contig1014: 23491-24081
Sequence    

Annotation

kegg
ID pop:POPTR_0001s13100g
description POPTRDRAFT_829380; gene GA family protein
nr
ID XP_002299345.1
description gene GA family protein [Populus trichocarpa]
swissprot
ID Q03200
description Light-regulated protein OS=Oryza sativa subsp. japonica GN=LIR1 PE=2 SV=1
trembl
ID B9GMS6
description Gene GA family protein OS=Populus trichocarpa GN=POPTR_0001s13100g PE=4 SV=1
Gene Ontology
ID GO:0009507
description light-regulated protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00683: 23332-24074
cDNA
(Sanger)
(ID:Location)		 001_F17.ab1: 23420-24071 , 018_M20.ab1: 23420-24072 , 020_B18.ab1: 23420-24072 , 020_O06.ab1: 23420-24071 , 028_C03.ab1: 23420-24071 , 050_K21.ab1: 23420-24072

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001014_020 0.0 - - gene GA family protein [Populus trichocarpa]
2 Hb_000320_390 0.1152802979 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
3 Hb_020141_030 0.1220113281 - - solanesyl diphosphate synthase, putative [Ricinus communis]
4 Hb_003018_150 0.1267239533 - - PREDICTED: uncharacterized protein LOC105628869 [Jatropha curcas]
5 Hb_000127_100 0.1270298367 - - PREDICTED: myb-related transcription factor, partner of profilin-like [Populus euphratica]
6 Hb_002811_050 0.1368728624 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
7 Hb_091433_050 0.1372874365 - - PREDICTED: uncharacterized protein LOC105646626 [Jatropha curcas]
8 Hb_022693_020 0.1381213153 - - pectin acetylesterase, putative [Ricinus communis]
9 Hb_004096_210 0.1397836347 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
10 Hb_001677_040 0.1421343291 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
11 Hb_000181_330 0.1422127262 - - ubiquitin ligase protein cop1, putative [Ricinus communis]
12 Hb_002818_150 0.1425993542 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
13 Hb_000272_030 0.1432832291 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
14 Hb_000618_110 0.1440952556 - - hypothetical protein POPTR_0003s09870g [Populus trichocarpa]
15 Hb_000173_270 0.1447931325 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
16 Hb_003929_240 0.1468656914 - - PREDICTED: uncharacterized protein LOC105643616 isoform X2 [Jatropha curcas]
17 Hb_000208_270 0.1482601959 - - PREDICTED: malate dehydrogenase [NADP], chloroplastic [Jatropha curcas]
18 Hb_000948_120 0.1484883696 - - PREDICTED: uncharacterized protein LOC105634688 isoform X1 [Jatropha curcas]
19 Hb_001210_060 0.1488142458 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
20 Hb_005488_130 0.149119902 - - transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_001014_020 Hb_001014_020 Hb_000320_390 Hb_000320_390 Hb_001014_020--Hb_000320_390 Hb_020141_030 Hb_020141_030 Hb_001014_020--Hb_020141_030 Hb_003018_150 Hb_003018_150 Hb_001014_020--Hb_003018_150 Hb_000127_100 Hb_000127_100 Hb_001014_020--Hb_000127_100 Hb_002811_050 Hb_002811_050 Hb_001014_020--Hb_002811_050 Hb_091433_050 Hb_091433_050 Hb_001014_020--Hb_091433_050 Hb_013394_120 Hb_013394_120 Hb_000320_390--Hb_013394_120 Hb_010222_060 Hb_010222_060 Hb_000320_390--Hb_010222_060 Hb_000272_030 Hb_000272_030 Hb_000320_390--Hb_000272_030 Hb_000173_270 Hb_000173_270 Hb_000320_390--Hb_000173_270 Hb_000260_410 Hb_000260_410 Hb_000320_390--Hb_000260_410 Hb_000208_270 Hb_000208_270 Hb_020141_030--Hb_000208_270 Hb_000787_210 Hb_000787_210 Hb_020141_030--Hb_000787_210 Hb_001541_280 Hb_001541_280 Hb_020141_030--Hb_001541_280 Hb_020141_030--Hb_003018_150 Hb_002814_010 Hb_002814_010 Hb_020141_030--Hb_002814_010 Hb_003058_170 Hb_003058_170 Hb_020141_030--Hb_003058_170 Hb_000847_030 Hb_000847_030 Hb_003018_150--Hb_000847_030 Hb_005914_160 Hb_005914_160 Hb_003018_150--Hb_005914_160 Hb_001210_060 Hb_001210_060 Hb_003018_150--Hb_001210_060 Hb_003018_150--Hb_003058_170 Hb_000618_110 Hb_000618_110 Hb_003018_150--Hb_000618_110 Hb_000002_500 Hb_000002_500 Hb_000127_100--Hb_000002_500 Hb_000116_220 Hb_000116_220 Hb_000127_100--Hb_000116_220 Hb_000982_100 Hb_000982_100 Hb_000127_100--Hb_000982_100 Hb_000127_100--Hb_000618_110 Hb_002818_150 Hb_002818_150 Hb_000127_100--Hb_002818_150 Hb_004117_370 Hb_004117_370 Hb_000127_100--Hb_004117_370 Hb_007982_040 Hb_007982_040 Hb_002811_050--Hb_007982_040 Hb_000099_170 Hb_000099_170 Hb_002811_050--Hb_000099_170 Hb_000264_280 Hb_000264_280 Hb_002811_050--Hb_000264_280 Hb_071079_020 Hb_071079_020 Hb_002811_050--Hb_071079_020 Hb_002811_050--Hb_000208_270 Hb_005181_120 Hb_005181_120 Hb_002811_050--Hb_005181_120 Hb_004650_050 Hb_004650_050 Hb_091433_050--Hb_004650_050 Hb_002636_030 Hb_002636_030 Hb_091433_050--Hb_002636_030 Hb_003680_060 Hb_003680_060 Hb_091433_050--Hb_003680_060 Hb_009393_130 Hb_009393_130 Hb_091433_050--Hb_009393_130 Hb_003605_060 Hb_003605_060 Hb_091433_050--Hb_003605_060 Hb_005210_010 Hb_005210_010 Hb_091433_050--Hb_005210_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34466 69.2597 172.334 181.478 3.21154 6.36858
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.3923 13.1824 3.26805 21.0628 284.924

CAGE analysis