Hb_000320_390

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig320: 313901-314529
Sequence    

Annotation

kegg
ID rcu:RCOM_0904590
description triptychon and cpc, putative
nr
ID XP_012091344.1
description PREDICTED: transcription factor CPC-like [Jatropha curcas]
swissprot
ID Q9LNI5
description MYB-like transcription factor ETC1 OS=Arabidopsis thaliana GN=ETC1 PE=2 SV=1
trembl
ID A0A067JAH2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21218 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor cpc-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33833: 313868-314516 , PASA_asmbl_33834: 313868-314576
cDNA
(Sanger)
(ID:Location)		 009_O11.ab1: 313868-314516

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000320_390 0.0 transcription factor TF Family: MYB-related PREDICTED: transcription factor CPC-like [Jatropha curcas]
2 Hb_001014_020 0.1152802979 - - gene GA family protein [Populus trichocarpa]
3 Hb_013394_120 0.122846973 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
4 Hb_010222_060 0.1302940351 - - PREDICTED: acyltransferase-like protein At1g54570, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_000272_030 0.1337134152 - - PREDICTED: WD repeat-containing protein 76 isoform X1 [Jatropha curcas]
6 Hb_000173_270 0.1337216316 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
7 Hb_000260_410 0.1340614634 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
8 Hb_000941_090 0.1347281188 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
9 Hb_008165_050 0.1349037436 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
10 Hb_001789_120 0.1352167501 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Jatropha curcas]
11 Hb_000818_090 0.1359534081 - - glutamate receptor 3 plant, putative [Ricinus communis]
12 Hb_132840_170 0.1376411428 transcription factor TF Family: NAC Transcription factor [Theobroma cacao]
13 Hb_000815_090 0.1432663302 - - PREDICTED: uncharacterized protein LOC105630464 isoform X1 [Jatropha curcas]
14 Hb_004880_050 0.143624063 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002818_150 0.1441561539 transcription factor TF Family: MYB hypothetical protein POPTR_0014s10680g [Populus trichocarpa]
16 Hb_006570_060 0.1447573976 - - PREDICTED: uncharacterized protein LOC105635332 [Jatropha curcas]
17 Hb_000252_260 0.1458718397 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
18 Hb_000002_500 0.146133251 - - PREDICTED: uncharacterized protein LOC105632094 isoform X1 [Jatropha curcas]
19 Hb_000107_090 0.1481097067 - - PREDICTED: kinesin KP1 [Jatropha curcas]
20 Hb_000031_210 0.1488635184 - - cytochrome P450, putative [Ricinus communis]

Gene co-expression network

sample Hb_000320_390 Hb_000320_390 Hb_001014_020 Hb_001014_020 Hb_000320_390--Hb_001014_020 Hb_013394_120 Hb_013394_120 Hb_000320_390--Hb_013394_120 Hb_010222_060 Hb_010222_060 Hb_000320_390--Hb_010222_060 Hb_000272_030 Hb_000272_030 Hb_000320_390--Hb_000272_030 Hb_000173_270 Hb_000173_270 Hb_000320_390--Hb_000173_270 Hb_000260_410 Hb_000260_410 Hb_000320_390--Hb_000260_410 Hb_020141_030 Hb_020141_030 Hb_001014_020--Hb_020141_030 Hb_003018_150 Hb_003018_150 Hb_001014_020--Hb_003018_150 Hb_000127_100 Hb_000127_100 Hb_001014_020--Hb_000127_100 Hb_002811_050 Hb_002811_050 Hb_001014_020--Hb_002811_050 Hb_091433_050 Hb_091433_050 Hb_001014_020--Hb_091433_050 Hb_001789_120 Hb_001789_120 Hb_013394_120--Hb_001789_120 Hb_013394_120--Hb_010222_060 Hb_132840_170 Hb_132840_170 Hb_013394_120--Hb_132840_170 Hb_000818_090 Hb_000818_090 Hb_013394_120--Hb_000818_090 Hb_009522_020 Hb_009522_020 Hb_013394_120--Hb_009522_020 Hb_014700_030 Hb_014700_030 Hb_013394_120--Hb_014700_030 Hb_010222_060--Hb_014700_030 Hb_010222_060--Hb_001789_120 Hb_010222_060--Hb_009522_020 Hb_010222_060--Hb_132840_170 Hb_002713_060 Hb_002713_060 Hb_010222_060--Hb_002713_060 Hb_006570_060 Hb_006570_060 Hb_000272_030--Hb_006570_060 Hb_000272_030--Hb_000260_410 Hb_000941_090 Hb_000941_090 Hb_000272_030--Hb_000941_090 Hb_002838_010 Hb_002838_010 Hb_000272_030--Hb_002838_010 Hb_000272_030--Hb_000173_270 Hb_000107_090 Hb_000107_090 Hb_000272_030--Hb_000107_090 Hb_000173_270--Hb_000260_410 Hb_005365_010 Hb_005365_010 Hb_000173_270--Hb_005365_010 Hb_001629_120 Hb_001629_120 Hb_000173_270--Hb_001629_120 Hb_000173_270--Hb_006570_060 Hb_044653_050 Hb_044653_050 Hb_000173_270--Hb_044653_050 Hb_017491_010 Hb_017491_010 Hb_000260_410--Hb_017491_010 Hb_000260_410--Hb_001629_120 Hb_000260_410--Hb_000941_090 Hb_000260_410--Hb_000818_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.641142 25.2267 38.1171 43.2637 0.06674 0.256331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.34527 0.39361 0.21578 3.59733 66.5048

CAGE analysis