Hb_009986_010

Information

Type -
Description -
Location Contig9986: 18725-21607
Sequence    

Annotation

kegg
ID tcc:TCM_003698
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061DW51
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_003698 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009986_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_002094_070 0.2588993638 - - Organic cation transporter, putative [Ricinus communis]
3 Hb_062785_010 0.2630330096 - - Organic cation transporter, putative [Ricinus communis]
4 Hb_007218_160 0.2654941753 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
5 Hb_001115_020 0.2697587805 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 2-like [Populus euphratica]
6 Hb_000684_050 0.2982814934 - - PREDICTED: MLO-like protein 6 [Sesamum indicum]
7 Hb_000243_150 0.3016258989 - - ATP binding protein, putative [Ricinus communis]
8 Hb_027380_200 0.3125502888 transcription factor TF Family: ARF PREDICTED: auxin response factor 6 isoform X2 [Jatropha curcas]
9 Hb_000883_040 0.3138847121 - - -
10 Hb_165080_010 0.3266417529 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
11 Hb_114893_050 0.3297621037 - - Uncharacterized protein isoform 3 [Theobroma cacao]
12 Hb_000307_120 0.3301662628 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
13 Hb_005779_040 0.3355173176 - - -
14 Hb_000061_120 0.3355268176 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
15 Hb_005348_070 0.3366128094 - - conserved hypothetical protein [Ricinus communis]
16 Hb_007850_010 0.3375678189 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
17 Hb_007164_030 0.3400148553 transcription factor TF Family: Orphans two-component system sensor histidine kinase/response regulator, putative [Ricinus communis]
18 Hb_005714_030 0.340237732 - - PREDICTED: COBRA-like protein 6 isoform X1 [Gossypium raimondii]
19 Hb_001950_110 0.3427284315 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
20 Hb_001250_090 0.3464478255 - - PREDICTED: protein NSP-INTERACTING KINASE 3 [Jatropha curcas]

Gene co-expression network

sample Hb_009986_010 Hb_009986_010 Hb_002094_070 Hb_002094_070 Hb_009986_010--Hb_002094_070 Hb_062785_010 Hb_062785_010 Hb_009986_010--Hb_062785_010 Hb_007218_160 Hb_007218_160 Hb_009986_010--Hb_007218_160 Hb_001115_020 Hb_001115_020 Hb_009986_010--Hb_001115_020 Hb_000684_050 Hb_000684_050 Hb_009986_010--Hb_000684_050 Hb_000243_150 Hb_000243_150 Hb_009986_010--Hb_000243_150 Hb_002094_070--Hb_062785_010 Hb_011724_030 Hb_011724_030 Hb_002094_070--Hb_011724_030 Hb_002217_520 Hb_002217_520 Hb_002094_070--Hb_002217_520 Hb_000307_120 Hb_000307_120 Hb_002094_070--Hb_000307_120 Hb_001117_120 Hb_001117_120 Hb_002094_070--Hb_001117_120 Hb_002094_070--Hb_007218_160 Hb_062785_010--Hb_000307_120 Hb_062785_010--Hb_011724_030 Hb_062785_010--Hb_002217_520 Hb_062785_010--Hb_001117_120 Hb_007218_160--Hb_000684_050 Hb_004837_150 Hb_004837_150 Hb_007218_160--Hb_004837_150 Hb_001123_150 Hb_001123_150 Hb_007218_160--Hb_001123_150 Hb_006816_480 Hb_006816_480 Hb_007218_160--Hb_006816_480 Hb_001230_030 Hb_001230_030 Hb_007218_160--Hb_001230_030 Hb_000331_510 Hb_000331_510 Hb_007218_160--Hb_000331_510 Hb_146420_010 Hb_146420_010 Hb_001115_020--Hb_146420_010 Hb_001369_800 Hb_001369_800 Hb_001115_020--Hb_001369_800 Hb_029695_120 Hb_029695_120 Hb_001115_020--Hb_029695_120 Hb_003998_010 Hb_003998_010 Hb_001115_020--Hb_003998_010 Hb_001999_320 Hb_001999_320 Hb_001115_020--Hb_001999_320 Hb_002411_160 Hb_002411_160 Hb_001115_020--Hb_002411_160 Hb_001404_090 Hb_001404_090 Hb_000684_050--Hb_001404_090 Hb_001124_140 Hb_001124_140 Hb_000684_050--Hb_001124_140 Hb_005305_120 Hb_005305_120 Hb_000684_050--Hb_005305_120 Hb_000684_050--Hb_001230_030 Hb_000684_050--Hb_006816_480 Hb_000416_060 Hb_000416_060 Hb_000684_050--Hb_000416_060 Hb_001329_270 Hb_001329_270 Hb_000243_150--Hb_001329_270 Hb_000239_080 Hb_000239_080 Hb_000243_150--Hb_000239_080 Hb_001488_390 Hb_001488_390 Hb_000243_150--Hb_001488_390 Hb_002042_060 Hb_002042_060 Hb_000243_150--Hb_002042_060 Hb_020805_120 Hb_020805_120 Hb_000243_150--Hb_020805_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00895547 0.0357509 0.00564251 0.0205681 0 0.0067645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0492419 0 0 0.0153799 0.0274957

CAGE analysis