Hb_001115_020

Information

Type transcription factor
Description TF Family: C2H2
Location Contig1115: 38949-39924
Sequence    

Annotation

kegg
ID vvi:100249581
description zinc finger protein 2
nr
ID XP_011043988.1
description PREDICTED: zinc finger protein 2-like [Populus euphratica]
swissprot
ID Q39261
description Zinc finger protein 2 OS=Arabidopsis thaliana GN=ZFP2 PE=2 SV=1
trembl
ID F6GXF3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0052g01120 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03504: 39313-39449
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001115_020 0.0 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 2-like [Populus euphratica]
2 Hb_146420_010 0.2207884922 - - alcohol dehydrogenase, putative [Ricinus communis]
3 Hb_001369_800 0.234317333 - - hypothetical protein B456_011G005000 [Gossypium raimondii]
4 Hb_029695_120 0.2513920898 - - hypothetical protein POPTR_0002s05320g [Populus trichocarpa]
5 Hb_003998_010 0.2543460525 - - PREDICTED: protein BRASSINOSTEROID INSENSITIVE 1 [Jatropha curcas]
6 Hb_001999_320 0.2558139077 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
7 Hb_002411_160 0.2564905542 - - PREDICTED: uncharacterized protein LOC105631262 isoform X1 [Jatropha curcas]
8 Hb_027136_040 0.2587859633 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
9 Hb_000318_040 0.2649152251 - - hypothetical protein JCGZ_04877 [Jatropha curcas]
10 Hb_023091_010 0.266434466 - - hypothetical protein POPTR_0016s06670g [Populus trichocarpa]
11 Hb_005883_110 0.2679479033 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
12 Hb_002541_020 0.2686382501 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
13 Hb_001484_090 0.2688487166 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
14 Hb_114943_020 0.2689572112 - - PREDICTED: NADPH--cytochrome P450 reductase 2 [Jatropha curcas]
15 Hb_002818_050 0.26914418 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
16 Hb_080332_010 0.2697269237 - - hypothetical protein POPTR_0018s10590g [Populus trichocarpa]
17 Hb_009986_010 0.2697587805 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_001196_040 0.2717857319 - - PREDICTED: uncharacterized protein LOC104100193 [Nicotiana tomentosiformis]
19 Hb_115137_010 0.2718003834 - - PREDICTED: probable protein S-acyltransferase 23 isoform X2 [Jatropha curcas]
20 Hb_000791_050 0.2734470244 - - PREDICTED: uncharacterized protein LOC105636760 [Jatropha curcas]

Gene co-expression network

sample Hb_001115_020 Hb_001115_020 Hb_146420_010 Hb_146420_010 Hb_001115_020--Hb_146420_010 Hb_001369_800 Hb_001369_800 Hb_001115_020--Hb_001369_800 Hb_029695_120 Hb_029695_120 Hb_001115_020--Hb_029695_120 Hb_003998_010 Hb_003998_010 Hb_001115_020--Hb_003998_010 Hb_001999_320 Hb_001999_320 Hb_001115_020--Hb_001999_320 Hb_002411_160 Hb_002411_160 Hb_001115_020--Hb_002411_160 Hb_146420_010--Hb_029695_120 Hb_146420_010--Hb_001999_320 Hb_001484_090 Hb_001484_090 Hb_146420_010--Hb_001484_090 Hb_003687_010 Hb_003687_010 Hb_146420_010--Hb_003687_010 Hb_003912_080 Hb_003912_080 Hb_146420_010--Hb_003912_080 Hb_002686_210 Hb_002686_210 Hb_146420_010--Hb_002686_210 Hb_002818_050 Hb_002818_050 Hb_001369_800--Hb_002818_050 Hb_002541_020 Hb_002541_020 Hb_001369_800--Hb_002541_020 Hb_080332_010 Hb_080332_010 Hb_001369_800--Hb_080332_010 Hb_002498_240 Hb_002498_240 Hb_001369_800--Hb_002498_240 Hb_010712_080 Hb_010712_080 Hb_001369_800--Hb_010712_080 Hb_001135_110 Hb_001135_110 Hb_001369_800--Hb_001135_110 Hb_029695_120--Hb_001484_090 Hb_001059_060 Hb_001059_060 Hb_029695_120--Hb_001059_060 Hb_011174_080 Hb_011174_080 Hb_029695_120--Hb_011174_080 Hb_004162_220 Hb_004162_220 Hb_029695_120--Hb_004162_220 Hb_006816_010 Hb_006816_010 Hb_029695_120--Hb_006816_010 Hb_003910_050 Hb_003910_050 Hb_029695_120--Hb_003910_050 Hb_000588_080 Hb_000588_080 Hb_003998_010--Hb_000588_080 Hb_002995_040 Hb_002995_040 Hb_003998_010--Hb_002995_040 Hb_000318_040 Hb_000318_040 Hb_003998_010--Hb_000318_040 Hb_002874_090 Hb_002874_090 Hb_003998_010--Hb_002874_090 Hb_000413_070 Hb_000413_070 Hb_003998_010--Hb_000413_070 Hb_001059_130 Hb_001059_130 Hb_003998_010--Hb_001059_130 Hb_001999_320--Hb_001059_060 Hb_003849_160 Hb_003849_160 Hb_001999_320--Hb_003849_160 Hb_001999_320--Hb_003912_080 Hb_004052_110 Hb_004052_110 Hb_001999_320--Hb_004052_110 Hb_002259_220 Hb_002259_220 Hb_001999_320--Hb_002259_220 Hb_009078_020 Hb_009078_020 Hb_001999_320--Hb_009078_020 Hb_086639_050 Hb_086639_050 Hb_002411_160--Hb_086639_050 Hb_080147_020 Hb_080147_020 Hb_002411_160--Hb_080147_020 Hb_001001_090 Hb_001001_090 Hb_002411_160--Hb_001001_090 Hb_000649_330 Hb_000649_330 Hb_002411_160--Hb_000649_330 Hb_114943_020 Hb_114943_020 Hb_002411_160--Hb_114943_020 Hb_000098_180 Hb_000098_180 Hb_002411_160--Hb_000098_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.20255 0.417671 0.546992 0.44229 0 0.273532
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.445242 0 0 0.342844 0.411632

CAGE analysis