Hb_146420_010

Information

Type -
Description -
Location Contig146420: 1347-1683
Sequence    

Annotation

kegg
ID rcu:RCOM_0223350
description alcohol dehydrogenase, putative (EC:1.3.1.74)
nr
ID XP_002524486.1
description alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID Q39172
description NADP-dependent alkenal double bond reductase P1 OS=Arabidopsis thaliana GN=P1 PE=1 SV=1
trembl
ID B9SER7
description Alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_0223350 PE=4 SV=1
Gene Ontology
ID GO:0008270
description 2-alkenal reductase (nadp(+)-dependent)-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_146420_010 0.0 - - alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_029695_120 0.1588886171 - - hypothetical protein POPTR_0002s05320g [Populus trichocarpa]
3 Hb_001999_320 0.1757398276 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
4 Hb_001484_090 0.1768363181 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
5 Hb_003687_010 0.1840882518 - - Cysteine-rich RLK 29, putative [Theobroma cacao]
6 Hb_003912_080 0.1851932377 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
7 Hb_002686_210 0.1894435071 - - zinc finger protein, putative [Ricinus communis]
8 Hb_000175_270 0.1895462873 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
9 Hb_001059_060 0.1915644588 - - PREDICTED: bifunctional riboflavin kinase/FMN phosphatase [Jatropha curcas]
10 Hb_004864_020 0.1942271283 - - Polyprotein, putative [Solanum demissum]
11 Hb_000366_030 0.1949130444 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like [Jatropha curcas]
12 Hb_001141_060 0.1981828504 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
13 Hb_025045_010 0.1985518094 - - catalytic, putative [Ricinus communis]
14 Hb_000936_090 0.2007714179 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X2 [Jatropha curcas]
15 Hb_029748_020 0.2009410177 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
16 Hb_001439_070 0.2011987978 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_000077_210 0.2041301625 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
18 Hb_002099_060 0.2044604592 - - Protein AFR, putative [Ricinus communis]
19 Hb_013405_180 0.2051347903 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
20 Hb_000920_290 0.206955194 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_146420_010 Hb_146420_010 Hb_029695_120 Hb_029695_120 Hb_146420_010--Hb_029695_120 Hb_001999_320 Hb_001999_320 Hb_146420_010--Hb_001999_320 Hb_001484_090 Hb_001484_090 Hb_146420_010--Hb_001484_090 Hb_003687_010 Hb_003687_010 Hb_146420_010--Hb_003687_010 Hb_003912_080 Hb_003912_080 Hb_146420_010--Hb_003912_080 Hb_002686_210 Hb_002686_210 Hb_146420_010--Hb_002686_210 Hb_029695_120--Hb_001484_090 Hb_001059_060 Hb_001059_060 Hb_029695_120--Hb_001059_060 Hb_011174_080 Hb_011174_080 Hb_029695_120--Hb_011174_080 Hb_004162_220 Hb_004162_220 Hb_029695_120--Hb_004162_220 Hb_006816_010 Hb_006816_010 Hb_029695_120--Hb_006816_010 Hb_003910_050 Hb_003910_050 Hb_029695_120--Hb_003910_050 Hb_001999_320--Hb_001059_060 Hb_003849_160 Hb_003849_160 Hb_001999_320--Hb_003849_160 Hb_001999_320--Hb_003912_080 Hb_004052_110 Hb_004052_110 Hb_001999_320--Hb_004052_110 Hb_002259_220 Hb_002259_220 Hb_001999_320--Hb_002259_220 Hb_009078_020 Hb_009078_020 Hb_001999_320--Hb_009078_020 Hb_002809_160 Hb_002809_160 Hb_001484_090--Hb_002809_160 Hb_001702_050 Hb_001702_050 Hb_001484_090--Hb_001702_050 Hb_001484_090--Hb_009078_020 Hb_001484_090--Hb_001059_060 Hb_011188_010 Hb_011188_010 Hb_001484_090--Hb_011188_010 Hb_025045_010 Hb_025045_010 Hb_003687_010--Hb_025045_010 Hb_003687_010--Hb_001484_090 Hb_029748_020 Hb_029748_020 Hb_003687_010--Hb_029748_020 Hb_002099_060 Hb_002099_060 Hb_003687_010--Hb_002099_060 Hb_000366_030 Hb_000366_030 Hb_003687_010--Hb_000366_030 Hb_002759_100 Hb_002759_100 Hb_003687_010--Hb_002759_100 Hb_002909_100 Hb_002909_100 Hb_003912_080--Hb_002909_100 Hb_000230_470 Hb_000230_470 Hb_003912_080--Hb_000230_470 Hb_004678_010 Hb_004678_010 Hb_003912_080--Hb_004678_010 Hb_001948_090 Hb_001948_090 Hb_003912_080--Hb_001948_090 Hb_002026_030 Hb_002026_030 Hb_003912_080--Hb_002026_030 Hb_002686_210--Hb_000230_470 Hb_000100_210 Hb_000100_210 Hb_002686_210--Hb_000100_210 Hb_005408_100 Hb_005408_100 Hb_002686_210--Hb_005408_100 Hb_001522_040 Hb_001522_040 Hb_002686_210--Hb_001522_040 Hb_002686_210--Hb_029748_020 Hb_000196_010 Hb_000196_010 Hb_002686_210--Hb_000196_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.29481 26.5975 18.7685 18.6249 0.72011 14.3675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.21994 1.05185 0 10.9531 29.1148

CAGE analysis