Hb_002686_210

Information

Type -
Description -
Location Contig2686: 140430-142259
Sequence    

Annotation

kegg
ID rcu:RCOM_1122040
description zinc finger protein, putative
nr
ID XP_002525456.1
description zinc finger protein, putative [Ricinus communis]
swissprot
ID Q8LPN7
description E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=1 SV=1
trembl
ID B9SHI7
description Zinc finger protein, putative OS=Ricinus communis GN=RCOM_1122040 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ring1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28026: 140620-141990
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002686_210 0.0 - - zinc finger protein, putative [Ricinus communis]
2 Hb_000230_470 0.1082818517 - - PREDICTED: mitogen-activated protein kinase 15 isoform X2 [Jatropha curcas]
3 Hb_000100_210 0.1143581056 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
4 Hb_005408_100 0.1199391369 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 14 [Jatropha curcas]
5 Hb_001522_040 0.1250873401 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
6 Hb_029748_020 0.1272307219 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_000196_010 0.1283284513 - - Patellin-5, putative [Ricinus communis]
8 Hb_003912_080 0.1287156391 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
9 Hb_006949_060 0.1291963165 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
10 Hb_052117_010 0.1305890647 - - kinase, putative [Ricinus communis]
11 Hb_002909_100 0.1334924678 - - PREDICTED: uncharacterized protein LOC105648153 [Jatropha curcas]
12 Hb_001948_090 0.1340465649 transcription factor TF Family: GRAS hypothetical protein POPTR_0005s14540g [Populus trichocarpa]
13 Hb_000950_040 0.1340923495 - - cation-transporting atpase plant, putative [Ricinus communis]
14 Hb_000732_230 0.1341680071 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1-like isoform X1 [Jatropha curcas]
15 Hb_001951_240 0.1353867229 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
16 Hb_132840_030 0.1361308155 transcription factor TF Family: MYB-related lhy1 [Populus tremula]
17 Hb_000438_020 0.1363319067 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
18 Hb_002235_370 0.1368860657 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
19 Hb_000320_270 0.1389889658 - - PREDICTED: 5'-adenylylsulfate reductase 1, chloroplastic [Jatropha curcas]
20 Hb_000997_340 0.1403298375 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002686_210 Hb_002686_210 Hb_000230_470 Hb_000230_470 Hb_002686_210--Hb_000230_470 Hb_000100_210 Hb_000100_210 Hb_002686_210--Hb_000100_210 Hb_005408_100 Hb_005408_100 Hb_002686_210--Hb_005408_100 Hb_001522_040 Hb_001522_040 Hb_002686_210--Hb_001522_040 Hb_029748_020 Hb_029748_020 Hb_002686_210--Hb_029748_020 Hb_000196_010 Hb_000196_010 Hb_002686_210--Hb_000196_010 Hb_000230_470--Hb_005408_100 Hb_002909_100 Hb_002909_100 Hb_000230_470--Hb_002909_100 Hb_000753_120 Hb_000753_120 Hb_000230_470--Hb_000753_120 Hb_003912_080 Hb_003912_080 Hb_000230_470--Hb_003912_080 Hb_000320_270 Hb_000320_270 Hb_000230_470--Hb_000320_270 Hb_000100_210--Hb_001522_040 Hb_000100_210--Hb_029748_020 Hb_002833_020 Hb_002833_020 Hb_000100_210--Hb_002833_020 Hb_000997_340 Hb_000997_340 Hb_000100_210--Hb_000997_340 Hb_023386_050 Hb_023386_050 Hb_000100_210--Hb_023386_050 Hb_000109_190 Hb_000109_190 Hb_005408_100--Hb_000109_190 Hb_005408_100--Hb_002909_100 Hb_005408_100--Hb_000320_270 Hb_002740_100 Hb_002740_100 Hb_005408_100--Hb_002740_100 Hb_005408_100--Hb_000753_120 Hb_052117_010 Hb_052117_010 Hb_001522_040--Hb_052117_010 Hb_009745_010 Hb_009745_010 Hb_001522_040--Hb_009745_010 Hb_001898_020 Hb_001898_020 Hb_001522_040--Hb_001898_020 Hb_001522_040--Hb_029748_020 Hb_002685_030 Hb_002685_030 Hb_001522_040--Hb_002685_030 Hb_000321_120 Hb_000321_120 Hb_029748_020--Hb_000321_120 Hb_002099_060 Hb_002099_060 Hb_029748_020--Hb_002099_060 Hb_000438_020 Hb_000438_020 Hb_029748_020--Hb_000438_020 Hb_155150_010 Hb_155150_010 Hb_029748_020--Hb_155150_010 Hb_000196_010--Hb_009745_010 Hb_000363_180 Hb_000363_180 Hb_000196_010--Hb_000363_180 Hb_000196_010--Hb_002909_100 Hb_000950_040 Hb_000950_040 Hb_000196_010--Hb_000950_040 Hb_000732_230 Hb_000732_230 Hb_000196_010--Hb_000732_230 Hb_000196_010--Hb_052117_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.97225 46.8956 26.3329 41.6136 4.05694 6.50155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.4559 0.44707 0.611624 18.8449 29.8849

CAGE analysis