Hb_010712_080

Information

Type -
Description -
Location Contig10712: 32382-46780
Sequence    

Annotation

kegg
ID rcu:RCOM_0621480
description Galactoside 2-alpha-L-fucosyltransferase, putative (EC:2.4.1.69)
nr
ID KFK33487.1
description hypothetical protein AALP_AA5G019400 [Arabis alpina]
swissprot
ID Q9M5Q1
description Galactoside 2-alpha-L-fucosyltransferase OS=Pisum sativum GN=FT1 PE=2 SV=1
trembl
ID A0A087GUD5
description Uncharacterized protein OS=Arabis alpina GN=AALP_AA5G019400 PE=4 SV=1
Gene Ontology
ID GO:0016020
description galactoside 2-alpha-l-fucosyltransferase-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02278: 36545-36955 , PASA_asmbl_02281: 40469-40874
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010712_080 0.0 - - hypothetical protein AALP_AA5G019400 [Arabis alpina]
2 Hb_000230_480 0.2026393082 - - PREDICTED: endo-1,3;1,4-beta-D-glucanase-like [Jatropha curcas]
3 Hb_002541_020 0.2041150904 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
4 Hb_001369_800 0.2077027486 - - hypothetical protein B456_011G005000 [Gossypium raimondii]
5 Hb_000034_080 0.2079444188 - - PREDICTED: MADS-box protein AGL24-like isoform X1 [Jatropha curcas]
6 Hb_114336_030 0.2134871266 - - PREDICTED: uncharacterized protein LOC105642104 [Jatropha curcas]
7 Hb_000243_160 0.2136911823 - - glutaredoxin-1, grx1, putative [Ricinus communis]
8 Hb_000983_170 0.2142074554 - - PREDICTED: inositol-pentakisphosphate 2-kinase-like isoform X1 [Jatropha curcas]
9 Hb_044653_030 0.2156857781 - - -
10 Hb_074449_010 0.2167716671 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
11 Hb_001005_160 0.2183810385 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002965_040 0.2188347026 - - drought-responsive family protein [Populus trichocarpa]
13 Hb_006570_150 0.2231189028 - - PREDICTED: uncharacterized protein LOC105635342 isoform X1 [Jatropha curcas]
14 Hb_000115_080 0.2234109163 - - PREDICTED: uncharacterized protein LOC105642032 [Jatropha curcas]
15 Hb_000345_260 0.2234767431 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Citrus sinensis]
16 Hb_000959_310 0.2242313532 - - PREDICTED: WD repeat domain-containing protein 83 [Jatropha curcas]
17 Hb_000438_090 0.2255360592 - - PREDICTED: mini-chromosome maintenance complex-binding protein [Jatropha curcas]
18 Hb_007885_060 0.2277621925 - - replication factor C 40 kDa family protein [Populus trichocarpa]
19 Hb_165279_010 0.2282928472 - - Kiwellin, putative [Ricinus communis]
20 Hb_156825_010 0.2288903135 transcription factor TF Family: C2C2-GATA hypothetical protein JCGZ_05054 [Jatropha curcas]

Gene co-expression network

sample Hb_010712_080 Hb_010712_080 Hb_000230_480 Hb_000230_480 Hb_010712_080--Hb_000230_480 Hb_002541_020 Hb_002541_020 Hb_010712_080--Hb_002541_020 Hb_001369_800 Hb_001369_800 Hb_010712_080--Hb_001369_800 Hb_000034_080 Hb_000034_080 Hb_010712_080--Hb_000034_080 Hb_114336_030 Hb_114336_030 Hb_010712_080--Hb_114336_030 Hb_000243_160 Hb_000243_160 Hb_010712_080--Hb_000243_160 Hb_007894_210 Hb_007894_210 Hb_000230_480--Hb_007894_210 Hb_000062_360 Hb_000062_360 Hb_000230_480--Hb_000062_360 Hb_001322_020 Hb_001322_020 Hb_000230_480--Hb_001322_020 Hb_000345_260 Hb_000345_260 Hb_000230_480--Hb_000345_260 Hb_011386_050 Hb_011386_050 Hb_000230_480--Hb_011386_050 Hb_000364_100 Hb_000364_100 Hb_000230_480--Hb_000364_100 Hb_002804_020 Hb_002804_020 Hb_002541_020--Hb_002804_020 Hb_000413_070 Hb_000413_070 Hb_002541_020--Hb_000413_070 Hb_074449_010 Hb_074449_010 Hb_002541_020--Hb_074449_010 Hb_000120_550 Hb_000120_550 Hb_002541_020--Hb_000120_550 Hb_165279_010 Hb_165279_010 Hb_002541_020--Hb_165279_010 Hb_002818_050 Hb_002818_050 Hb_002541_020--Hb_002818_050 Hb_001369_800--Hb_002818_050 Hb_001369_800--Hb_002541_020 Hb_080332_010 Hb_080332_010 Hb_001369_800--Hb_080332_010 Hb_002498_240 Hb_002498_240 Hb_001369_800--Hb_002498_240 Hb_001135_110 Hb_001135_110 Hb_001369_800--Hb_001135_110 Hb_003038_120 Hb_003038_120 Hb_000034_080--Hb_003038_120 Hb_003897_040 Hb_003897_040 Hb_000034_080--Hb_003897_040 Hb_032990_010 Hb_032990_010 Hb_000034_080--Hb_032990_010 Hb_003096_060 Hb_003096_060 Hb_000034_080--Hb_003096_060 Hb_007062_040 Hb_007062_040 Hb_000034_080--Hb_007062_040 Hb_007413_040 Hb_007413_040 Hb_000034_080--Hb_007413_040 Hb_001097_100 Hb_001097_100 Hb_114336_030--Hb_001097_100 Hb_001114_160 Hb_001114_160 Hb_114336_030--Hb_001114_160 Hb_182424_030 Hb_182424_030 Hb_114336_030--Hb_182424_030 Hb_000170_200 Hb_000170_200 Hb_114336_030--Hb_000170_200 Hb_001221_320 Hb_001221_320 Hb_114336_030--Hb_001221_320 Hb_003848_040 Hb_003848_040 Hb_114336_030--Hb_003848_040 Hb_000983_170 Hb_000983_170 Hb_000243_160--Hb_000983_170 Hb_001418_040 Hb_001418_040 Hb_000243_160--Hb_001418_040 Hb_000031_280 Hb_000031_280 Hb_000243_160--Hb_000031_280 Hb_000243_160--Hb_000034_080 Hb_003688_090 Hb_003688_090 Hb_000243_160--Hb_003688_090 Hb_000243_160--Hb_003038_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0682822 0.0617142 0.131641 0.102034 0.0401448 0.075412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.134914 0.0212337 0 0.0252559 0.0226795

CAGE analysis