Hb_001369_800

Information

Type -
Description -
Location Contig1369: 630485-631936
Sequence    

Annotation

kegg
ID atr:s00155p00051130
description AMTR_s00155p00051130; hypothetical protein
nr
ID KJB69090.1
description hypothetical protein B456_011G005000 [Gossypium raimondii]
swissprot
ID Q5R821
description Obg-like ATPase 1 OS=Pongo abelii GN=OLA1 PE=2 SV=1
trembl
ID A0A0D2VGG5
description Gossypium raimondii chromosome 11, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_011G005000 PE=4 SV=1
Gene Ontology
ID GO:0032550
description obg-like atpase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10231: 626013-629791 , PASA_asmbl_10237: 631047-631274
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_800 0.0 - - hypothetical protein B456_011G005000 [Gossypium raimondii]
2 Hb_002818_050 0.1804745807 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
3 Hb_002541_020 0.2011619753 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
4 Hb_080332_010 0.2020973866 - - hypothetical protein POPTR_0018s10590g [Populus trichocarpa]
5 Hb_002498_240 0.2042519813 - - PREDICTED: glucan endo-1,3-beta-glucosidase 1 isoform X1 [Jatropha curcas]
6 Hb_010712_080 0.2077027486 - - hypothetical protein AALP_AA5G019400 [Arabis alpina]
7 Hb_001135_110 0.2097074814 - - -
8 Hb_000742_190 0.209783521 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_001519_040 0.2121438026 - - PREDICTED: uncharacterized protein LOC105636007 [Jatropha curcas]
10 Hb_009393_200 0.2214158702 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
11 Hb_114943_020 0.2222494482 - - PREDICTED: NADPH--cytochrome P450 reductase 2 [Jatropha curcas]
12 Hb_010942_020 0.2263830411 - - conserved hypothetical protein [Ricinus communis]
13 Hb_009222_070 0.2269446037 - - PREDICTED: xylosyltransferase 2 [Jatropha curcas]
14 Hb_010883_140 0.2278825744 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
15 Hb_002471_110 0.2287410327 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 28 [Jatropha curcas]
16 Hb_008494_030 0.2291262873 - - catalytic, putative [Ricinus communis]
17 Hb_133230_010 0.2306706936 - - hypothetical protein L484_001846 [Morus notabilis]
18 Hb_026234_010 0.2329736561 - - choline monooxygenase, putative [Ricinus communis]
19 Hb_000186_300 0.233275259 - - PREDICTED: malonyl-CoA decarboxylase, mitochondrial [Jatropha curcas]
20 Hb_004800_150 0.2341466422 transcription factor TF Family: SNF2 PREDICTED: ATP-dependent DNA helicase DDM1 [Jatropha curcas]

Gene co-expression network

sample Hb_001369_800 Hb_001369_800 Hb_002818_050 Hb_002818_050 Hb_001369_800--Hb_002818_050 Hb_002541_020 Hb_002541_020 Hb_001369_800--Hb_002541_020 Hb_080332_010 Hb_080332_010 Hb_001369_800--Hb_080332_010 Hb_002498_240 Hb_002498_240 Hb_001369_800--Hb_002498_240 Hb_010712_080 Hb_010712_080 Hb_001369_800--Hb_010712_080 Hb_001135_110 Hb_001135_110 Hb_001369_800--Hb_001135_110 Hb_010942_020 Hb_010942_020 Hb_002818_050--Hb_010942_020 Hb_002818_050--Hb_002541_020 Hb_084513_010 Hb_084513_010 Hb_002818_050--Hb_084513_010 Hb_001519_040 Hb_001519_040 Hb_002818_050--Hb_001519_040 Hb_003605_040 Hb_003605_040 Hb_002818_050--Hb_003605_040 Hb_001268_340 Hb_001268_340 Hb_002818_050--Hb_001268_340 Hb_002804_020 Hb_002804_020 Hb_002541_020--Hb_002804_020 Hb_000413_070 Hb_000413_070 Hb_002541_020--Hb_000413_070 Hb_074449_010 Hb_074449_010 Hb_002541_020--Hb_074449_010 Hb_000120_550 Hb_000120_550 Hb_002541_020--Hb_000120_550 Hb_165279_010 Hb_165279_010 Hb_002541_020--Hb_165279_010 Hb_010315_100 Hb_010315_100 Hb_080332_010--Hb_010315_100 Hb_003430_080 Hb_003430_080 Hb_080332_010--Hb_003430_080 Hb_000926_340 Hb_000926_340 Hb_080332_010--Hb_000926_340 Hb_000318_040 Hb_000318_040 Hb_080332_010--Hb_000318_040 Hb_028487_130 Hb_028487_130 Hb_080332_010--Hb_028487_130 Hb_002250_050 Hb_002250_050 Hb_080332_010--Hb_002250_050 Hb_005357_110 Hb_005357_110 Hb_002498_240--Hb_005357_110 Hb_001160_110 Hb_001160_110 Hb_002498_240--Hb_001160_110 Hb_004730_020 Hb_004730_020 Hb_002498_240--Hb_004730_020 Hb_074399_010 Hb_074399_010 Hb_002498_240--Hb_074399_010 Hb_001123_110 Hb_001123_110 Hb_002498_240--Hb_001123_110 Hb_003740_020 Hb_003740_020 Hb_002498_240--Hb_003740_020 Hb_000230_480 Hb_000230_480 Hb_010712_080--Hb_000230_480 Hb_010712_080--Hb_002541_020 Hb_000034_080 Hb_000034_080 Hb_010712_080--Hb_000034_080 Hb_114336_030 Hb_114336_030 Hb_010712_080--Hb_114336_030 Hb_000243_160 Hb_000243_160 Hb_010712_080--Hb_000243_160 Hb_000732_030 Hb_000732_030 Hb_001135_110--Hb_000732_030 Hb_001135_110--Hb_002498_240 Hb_000959_190 Hb_000959_190 Hb_001135_110--Hb_000959_190 Hb_001135_110--Hb_001123_110 Hb_013834_010 Hb_013834_010 Hb_001135_110--Hb_013834_010 Hb_003747_050 Hb_003747_050 Hb_001135_110--Hb_003747_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.128974 0.158392 0.351883 0.296769 0.0574094 0.196683
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.131483 0 0 0.0627288 0.103972

CAGE analysis