Hb_000243_150

Information

Type -
Description -
Location Contig243: 131653-135294
Sequence    

Annotation

kegg
ID rcu:RCOM_0415500
description ATP binding protein, putative
nr
ID XP_002533655.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9SD39
description Probable methyltransferase PMT27 OS=Arabidopsis thaliana GN=At3g51070 PE=3 SV=1
trembl
ID B9T5Y6
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0415500 PE=4 SV=1
Gene Ontology
ID GO:0005488
description probable methyltransferase pmt27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000243_150 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_001329_270 0.278852094 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
3 Hb_000239_080 0.2851392122 - - hypothetical protein POPTR_0014s01730g [Populus trichocarpa]
4 Hb_001488_390 0.2869560584 - - SP1L, putative [Ricinus communis]
5 Hb_002042_060 0.2925605209 - - conserved hypothetical protein [Ricinus communis]
6 Hb_020805_120 0.3004366005 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
7 Hb_009986_010 0.3016258989 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_006185_010 0.301917186 - - hypothetical protein L484_013453 [Morus notabilis]
9 Hb_001950_110 0.3077740834 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
10 Hb_007850_010 0.3094428593 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.4 [Jatropha curcas]
11 Hb_003092_060 0.3104374877 - - calcineurin-like phosphoesterase [Manihot esculenta]
12 Hb_000307_120 0.3106012072 - - hypothetical protein B456_002G120900 [Gossypium raimondii]
13 Hb_000221_090 0.3133361805 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-6-like [Jatropha curcas]
14 Hb_000836_600 0.3183290372 - - PREDICTED: delta(8)-fatty-acid desaturase 2 [Jatropha curcas]
15 Hb_047583_010 0.3189137284 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
16 Hb_008248_020 0.3197698864 transcription factor TF Family: DBB zinc finger protein, putative [Ricinus communis]
17 Hb_002122_080 0.322457976 - - -
18 Hb_000684_050 0.322563565 - - PREDICTED: MLO-like protein 6 [Sesamum indicum]
19 Hb_030312_010 0.3242167168 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004013_020 0.3244396775 - - PREDICTED: F-box protein SKIP2 [Jatropha curcas]

Gene co-expression network

sample Hb_000243_150 Hb_000243_150 Hb_001329_270 Hb_001329_270 Hb_000243_150--Hb_001329_270 Hb_000239_080 Hb_000239_080 Hb_000243_150--Hb_000239_080 Hb_001488_390 Hb_001488_390 Hb_000243_150--Hb_001488_390 Hb_002042_060 Hb_002042_060 Hb_000243_150--Hb_002042_060 Hb_020805_120 Hb_020805_120 Hb_000243_150--Hb_020805_120 Hb_009986_010 Hb_009986_010 Hb_000243_150--Hb_009986_010 Hb_001474_020 Hb_001474_020 Hb_001329_270--Hb_001474_020 Hb_001054_090 Hb_001054_090 Hb_001329_270--Hb_001054_090 Hb_132840_160 Hb_132840_160 Hb_001329_270--Hb_132840_160 Hb_001329_270--Hb_020805_120 Hb_001247_270 Hb_001247_270 Hb_001329_270--Hb_001247_270 Hb_004837_150 Hb_004837_150 Hb_001329_270--Hb_004837_150 Hb_000434_070 Hb_000434_070 Hb_000239_080--Hb_000434_070 Hb_158560_010 Hb_158560_010 Hb_000239_080--Hb_158560_010 Hb_001477_020 Hb_001477_020 Hb_000239_080--Hb_001477_020 Hb_003894_010 Hb_003894_010 Hb_000239_080--Hb_003894_010 Hb_040734_010 Hb_040734_010 Hb_000239_080--Hb_040734_010 Hb_001579_200 Hb_001579_200 Hb_000239_080--Hb_001579_200 Hb_000056_190 Hb_000056_190 Hb_001488_390--Hb_000056_190 Hb_000684_220 Hb_000684_220 Hb_001488_390--Hb_000684_220 Hb_000692_100 Hb_000692_100 Hb_001488_390--Hb_000692_100 Hb_003462_040 Hb_003462_040 Hb_001488_390--Hb_003462_040 Hb_105033_010 Hb_105033_010 Hb_001488_390--Hb_105033_010 Hb_001008_080 Hb_001008_080 Hb_001488_390--Hb_001008_080 Hb_031939_020 Hb_031939_020 Hb_002042_060--Hb_031939_020 Hb_005588_130 Hb_005588_130 Hb_002042_060--Hb_005588_130 Hb_004730_010 Hb_004730_010 Hb_002042_060--Hb_004730_010 Hb_000068_040 Hb_000068_040 Hb_002042_060--Hb_000068_040 Hb_034953_010 Hb_034953_010 Hb_002042_060--Hb_034953_010 Hb_009403_010 Hb_009403_010 Hb_002042_060--Hb_009403_010 Hb_031089_050 Hb_031089_050 Hb_020805_120--Hb_031089_050 Hb_000473_120 Hb_000473_120 Hb_020805_120--Hb_000473_120 Hb_003006_080 Hb_003006_080 Hb_020805_120--Hb_003006_080 Hb_000138_060 Hb_000138_060 Hb_020805_120--Hb_000138_060 Hb_000109_190 Hb_000109_190 Hb_020805_120--Hb_000109_190 Hb_002289_150 Hb_002289_150 Hb_020805_120--Hb_002289_150 Hb_002094_070 Hb_002094_070 Hb_009986_010--Hb_002094_070 Hb_062785_010 Hb_062785_010 Hb_009986_010--Hb_062785_010 Hb_007218_160 Hb_007218_160 Hb_009986_010--Hb_007218_160 Hb_001115_020 Hb_001115_020 Hb_009986_010--Hb_001115_020 Hb_000684_050 Hb_000684_050 Hb_009986_010--Hb_000684_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00669426 0.0419065 0.00495555 0.0443208 0.013401 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0303658 0 0 0.00947996 0.0254711

CAGE analysis