Hb_040734_010

Information

Type -
Description -
Location Contig40734: 4-528
Sequence    

Annotation

kegg
ID rcu:RCOM_0760970
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012082370.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
swissprot
ID Q9ZUU3
description Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1
trembl
ID A0A067JYZ8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16511 PE=4 SV=1
Gene Ontology
ID GO:0009535
description pentatricopeptide repeat-containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_040734_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
2 Hb_002820_020 0.1044659999 - - hypothetical protein VITISV_005587 [Vitis vinifera]
3 Hb_000619_010 0.1257832114 - - TPA: hypothetical protein ZEAMMB73_187549 [Zea mays]
4 Hb_001454_200 0.1312731227 transcription factor TF Family: TRAF PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]
5 Hb_001951_150 0.1384353228 - - PREDICTED: uncharacterized protein LOC105649758 [Jatropha curcas]
6 Hb_000179_270 0.1386721314 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
7 Hb_010128_100 0.1410474976 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
8 Hb_000684_210 0.1414240584 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
9 Hb_001589_010 0.1422311809 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
10 Hb_000613_070 0.1423192595 - - -
11 Hb_134849_010 0.1479413154 - - ATP synthase subunit d, putative [Ricinus communis]
12 Hb_001976_040 0.1479680533 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
13 Hb_000087_070 0.1480598315 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
14 Hb_001999_210 0.1486101339 - - PREDICTED: sodium-dependent phosphate transport protein 1, chloroplastic [Eucalyptus grandis]
15 Hb_001946_050 0.1496091969 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005800_030 0.1504349408 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
17 Hb_000046_170 0.1506115444 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
18 Hb_020025_010 0.1531862787 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
19 Hb_000120_290 0.1533311945 - - PREDICTED: N-acylphosphatidylethanolamine synthase isoform X1 [Jatropha curcas]
20 Hb_006637_070 0.1536467872 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]

Gene co-expression network

sample Hb_040734_010 Hb_040734_010 Hb_002820_020 Hb_002820_020 Hb_040734_010--Hb_002820_020 Hb_000619_010 Hb_000619_010 Hb_040734_010--Hb_000619_010 Hb_001454_200 Hb_001454_200 Hb_040734_010--Hb_001454_200 Hb_001951_150 Hb_001951_150 Hb_040734_010--Hb_001951_150 Hb_000179_270 Hb_000179_270 Hb_040734_010--Hb_000179_270 Hb_010128_100 Hb_010128_100 Hb_040734_010--Hb_010128_100 Hb_005800_030 Hb_005800_030 Hb_002820_020--Hb_005800_030 Hb_002820_020--Hb_000179_270 Hb_000087_070 Hb_000087_070 Hb_002820_020--Hb_000087_070 Hb_000347_240 Hb_000347_240 Hb_002820_020--Hb_000347_240 Hb_185255_010 Hb_185255_010 Hb_002820_020--Hb_185255_010 Hb_001189_070 Hb_001189_070 Hb_002820_020--Hb_001189_070 Hb_000347_250 Hb_000347_250 Hb_000619_010--Hb_000347_250 Hb_001589_010 Hb_001589_010 Hb_000619_010--Hb_001589_010 Hb_020025_010 Hb_020025_010 Hb_000619_010--Hb_020025_010 Hb_000619_010--Hb_002820_020 Hb_139294_010 Hb_139294_010 Hb_000619_010--Hb_139294_010 Hb_002495_080 Hb_002495_080 Hb_001454_200--Hb_002495_080 Hb_002217_250 Hb_002217_250 Hb_001454_200--Hb_002217_250 Hb_006658_020 Hb_006658_020 Hb_001454_200--Hb_006658_020 Hb_001454_200--Hb_000347_250 Hb_023313_030 Hb_023313_030 Hb_001454_200--Hb_023313_030 Hb_001454_200--Hb_002820_020 Hb_011214_090 Hb_011214_090 Hb_001951_150--Hb_011214_090 Hb_000016_210 Hb_000016_210 Hb_001951_150--Hb_000016_210 Hb_001946_050 Hb_001946_050 Hb_001951_150--Hb_001946_050 Hb_005463_110 Hb_005463_110 Hb_001951_150--Hb_005463_110 Hb_001314_080 Hb_001314_080 Hb_001951_150--Hb_001314_080 Hb_001999_210 Hb_001999_210 Hb_001951_150--Hb_001999_210 Hb_000179_270--Hb_000087_070 Hb_002272_270 Hb_002272_270 Hb_000179_270--Hb_002272_270 Hb_000179_270--Hb_001189_070 Hb_002042_150 Hb_002042_150 Hb_000179_270--Hb_002042_150 Hb_001269_190 Hb_001269_190 Hb_000179_270--Hb_001269_190 Hb_000483_300 Hb_000483_300 Hb_010128_100--Hb_000483_300 Hb_010128_100--Hb_001269_190 Hb_023371_020 Hb_023371_020 Hb_010128_100--Hb_023371_020 Hb_010128_100--Hb_001951_150 Hb_001141_420 Hb_001141_420 Hb_010128_100--Hb_001141_420 Hb_001512_010 Hb_001512_010 Hb_010128_100--Hb_001512_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.52207 1.73044 1.21377 3.3905 1.73354 0.707501
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.48043 2.72839 0.666674 2.01678 4.2336

CAGE analysis