Hb_000619_010

Information

Type -
Description -
Location Contig619: 2834-4979
Sequence    

Annotation

kegg
ID -
description -
nr
ID DAA37693.1
description TPA: hypothetical protein ZEAMMB73_187549 [Zea mays]
swissprot
ID -
description -
trembl
ID A0A096QKG7
description Uncharacterized protein OS=Zea mays GN=Zm.6561 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000619_010 0.0 - - TPA: hypothetical protein ZEAMMB73_187549 [Zea mays]
2 Hb_000347_250 0.1220016548 - - PREDICTED: uncharacterized protein LOC105133971 [Populus euphratica]
3 Hb_040734_010 0.1257832114 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
4 Hb_001589_010 0.1341123492 - - PREDICTED: uncharacterized protein LOC105638192 isoform X1 [Jatropha curcas]
5 Hb_020025_010 0.1359900417 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
6 Hb_002820_020 0.1372057233 - - hypothetical protein VITISV_005587 [Vitis vinifera]
7 Hb_139294_010 0.1403294169 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_002534_100 0.1420897585 - - PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
9 Hb_001514_120 0.1427310278 - - hypothetical protein VITISV_015004 [Vitis vinifera]
10 Hb_000482_190 0.1429870007 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
11 Hb_000292_100 0.143225679 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
12 Hb_001386_110 0.1454180725 - - PREDICTED: LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 [Populus euphratica]
13 Hb_001454_200 0.1483883138 transcription factor TF Family: TRAF PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]
14 Hb_000230_400 0.148708795 - - PREDICTED: protein ABCI12, chloroplastic isoform X1 [Jatropha curcas]
15 Hb_001712_060 0.1503416579 - - PREDICTED: proline-rich receptor-like protein kinase PERK9 [Jatropha curcas]
16 Hb_001976_040 0.1509815645 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
17 Hb_001489_090 0.1530991177 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
18 Hb_006637_070 0.154031764 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
19 Hb_001648_030 0.1542417439 - - PREDICTED: uncharacterized protein LOC105628931 isoform X2 [Jatropha curcas]
20 Hb_006775_130 0.1547377578 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]

Gene co-expression network

sample Hb_000619_010 Hb_000619_010 Hb_000347_250 Hb_000347_250 Hb_000619_010--Hb_000347_250 Hb_040734_010 Hb_040734_010 Hb_000619_010--Hb_040734_010 Hb_001589_010 Hb_001589_010 Hb_000619_010--Hb_001589_010 Hb_020025_010 Hb_020025_010 Hb_000619_010--Hb_020025_010 Hb_002820_020 Hb_002820_020 Hb_000619_010--Hb_002820_020 Hb_139294_010 Hb_139294_010 Hb_000619_010--Hb_139294_010 Hb_000292_100 Hb_000292_100 Hb_000347_250--Hb_000292_100 Hb_007472_070 Hb_007472_070 Hb_000347_250--Hb_007472_070 Hb_062226_130 Hb_062226_130 Hb_000347_250--Hb_062226_130 Hb_012022_040 Hb_012022_040 Hb_000347_250--Hb_012022_040 Hb_002849_130 Hb_002849_130 Hb_000347_250--Hb_002849_130 Hb_001259_050 Hb_001259_050 Hb_000347_250--Hb_001259_050 Hb_040734_010--Hb_002820_020 Hb_001454_200 Hb_001454_200 Hb_040734_010--Hb_001454_200 Hb_001951_150 Hb_001951_150 Hb_040734_010--Hb_001951_150 Hb_000179_270 Hb_000179_270 Hb_040734_010--Hb_000179_270 Hb_010128_100 Hb_010128_100 Hb_040734_010--Hb_010128_100 Hb_002205_230 Hb_002205_230 Hb_001589_010--Hb_002205_230 Hb_000720_050 Hb_000720_050 Hb_001589_010--Hb_000720_050 Hb_001936_090 Hb_001936_090 Hb_001589_010--Hb_001936_090 Hb_005116_050 Hb_005116_050 Hb_001589_010--Hb_005116_050 Hb_001789_110 Hb_001789_110 Hb_001589_010--Hb_001789_110 Hb_004450_040 Hb_004450_040 Hb_001589_010--Hb_004450_040 Hb_000035_480 Hb_000035_480 Hb_020025_010--Hb_000035_480 Hb_000077_150 Hb_000077_150 Hb_020025_010--Hb_000077_150 Hb_002235_100 Hb_002235_100 Hb_020025_010--Hb_002235_100 Hb_002303_020 Hb_002303_020 Hb_020025_010--Hb_002303_020 Hb_003994_160 Hb_003994_160 Hb_020025_010--Hb_003994_160 Hb_001214_050 Hb_001214_050 Hb_020025_010--Hb_001214_050 Hb_005800_030 Hb_005800_030 Hb_002820_020--Hb_005800_030 Hb_002820_020--Hb_000179_270 Hb_000087_070 Hb_000087_070 Hb_002820_020--Hb_000087_070 Hb_000347_240 Hb_000347_240 Hb_002820_020--Hb_000347_240 Hb_185255_010 Hb_185255_010 Hb_002820_020--Hb_185255_010 Hb_001189_070 Hb_001189_070 Hb_002820_020--Hb_001189_070 Hb_005162_090 Hb_005162_090 Hb_139294_010--Hb_005162_090 Hb_139294_010--Hb_012022_040 Hb_005784_040 Hb_005784_040 Hb_139294_010--Hb_005784_040 Hb_139294_010--Hb_000347_250 Hb_000221_190 Hb_000221_190 Hb_139294_010--Hb_000221_190 Hb_017987_050 Hb_017987_050 Hb_139294_010--Hb_017987_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.75369 5.68898 2.89542 5.42369 4.34446 1.30932
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.72505 9.05478 2.84235 4.02511 8.3897

CAGE analysis