Hb_002820_020

Information

Type -
Description -
Location Contig2820: 9566-15363
Sequence    

Annotation

kegg
ID cmo:103503220
description uncharacterized LOC103503220
nr
ID CAN71834.1
description hypothetical protein VITISV_005587 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5AYX3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005587 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002820_020 0.0 - - hypothetical protein VITISV_005587 [Vitis vinifera]
2 Hb_005800_030 0.0693858971 - - PREDICTED: lysM and putative peptidoglycan-binding domain-containing protein 4-like [Jatropha curcas]
3 Hb_000179_270 0.0757818181 - - hypothetical protein JCGZ_07444 [Jatropha curcas]
4 Hb_000087_070 0.0837306925 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
5 Hb_000347_240 0.0847336508 - - PREDICTED: proteasome subunit alpha type-6 [Pyrus x bretschneideri]
6 Hb_185255_010 0.085604114 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
7 Hb_001189_070 0.0925220903 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
8 Hb_023371_020 0.0933084353 - - PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
9 Hb_001269_190 0.0935797104 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
10 Hb_001489_090 0.0949721109 - - PREDICTED: uncharacterized protein LOC105649775 [Jatropha curcas]
11 Hb_002553_060 0.0960231957 - - PREDICTED: electron transfer flavoprotein subunit beta, mitochondrial [Jatropha curcas]
12 Hb_004545_110 0.0961049688 - - DHHC-type zinc finger family protein isoform 1 [Theobroma cacao]
13 Hb_000483_300 0.0981899696 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
14 Hb_006683_070 0.099072472 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
15 Hb_000840_200 0.0992489081 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
16 Hb_000684_210 0.1017227042 - - PREDICTED: uncharacterized protein LOC105642177 [Jatropha curcas]
17 Hb_015675_040 0.1028754904 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
18 Hb_000347_250 0.1031171874 - - PREDICTED: uncharacterized protein LOC105133971 [Populus euphratica]
19 Hb_001366_180 0.1036078208 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
20 Hb_000120_370 0.1039238693 - - type 2 diacylglycerol acyltransferase [Ricinus communis]

Gene co-expression network

sample Hb_002820_020 Hb_002820_020 Hb_005800_030 Hb_005800_030 Hb_002820_020--Hb_005800_030 Hb_000179_270 Hb_000179_270 Hb_002820_020--Hb_000179_270 Hb_000087_070 Hb_000087_070 Hb_002820_020--Hb_000087_070 Hb_000347_240 Hb_000347_240 Hb_002820_020--Hb_000347_240 Hb_185255_010 Hb_185255_010 Hb_002820_020--Hb_185255_010 Hb_001189_070 Hb_001189_070 Hb_002820_020--Hb_001189_070 Hb_133702_010 Hb_133702_010 Hb_005800_030--Hb_133702_010 Hb_004545_110 Hb_004545_110 Hb_005800_030--Hb_004545_110 Hb_003878_150 Hb_003878_150 Hb_005800_030--Hb_003878_150 Hb_004452_120 Hb_004452_120 Hb_005800_030--Hb_004452_120 Hb_000061_180 Hb_000061_180 Hb_005800_030--Hb_000061_180 Hb_000179_270--Hb_000087_070 Hb_002272_270 Hb_002272_270 Hb_000179_270--Hb_002272_270 Hb_000179_270--Hb_001189_070 Hb_002042_150 Hb_002042_150 Hb_000179_270--Hb_002042_150 Hb_001269_190 Hb_001269_190 Hb_000179_270--Hb_001269_190 Hb_000087_070--Hb_002272_270 Hb_004607_090 Hb_004607_090 Hb_000087_070--Hb_004607_090 Hb_000087_070--Hb_001269_190 Hb_000840_200 Hb_000840_200 Hb_000087_070--Hb_000840_200 Hb_000087_070--Hb_003878_150 Hb_000347_240--Hb_001189_070 Hb_000483_300 Hb_000483_300 Hb_000347_240--Hb_000483_300 Hb_000347_240--Hb_004545_110 Hb_001489_090 Hb_001489_090 Hb_000347_240--Hb_001489_090 Hb_006573_190 Hb_006573_190 Hb_000347_240--Hb_006573_190 Hb_000566_120 Hb_000566_120 Hb_000347_240--Hb_000566_120 Hb_025098_010 Hb_025098_010 Hb_185255_010--Hb_025098_010 Hb_006683_070 Hb_006683_070 Hb_185255_010--Hb_006683_070 Hb_005144_050 Hb_005144_050 Hb_185255_010--Hb_005144_050 Hb_185255_010--Hb_001269_190 Hb_001489_110 Hb_001489_110 Hb_185255_010--Hb_001489_110 Hb_001307_030 Hb_001307_030 Hb_185255_010--Hb_001307_030 Hb_008841_020 Hb_008841_020 Hb_001189_070--Hb_008841_020 Hb_000310_090 Hb_000310_090 Hb_001189_070--Hb_000310_090 Hb_031862_100 Hb_031862_100 Hb_001189_070--Hb_031862_100 Hb_011344_120 Hb_011344_120 Hb_001189_070--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_001189_070--Hb_001314_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.78547 1.54524 1.99256 4.17557 2.09898 1.34473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.78334 3.54544 1.72363 2.4082 3.81599

CAGE analysis