Hb_023313_030

Information

Type -
Description -
Location Contig23313: 47387-50294
Sequence    

Annotation

kegg
ID rcu:RCOM_1016720
description hypothetical protein
nr
ID XP_002529333.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9STL4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1016720 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24490: 47387-50295 , PASA_asmbl_24491: 48493-48726 , PASA_asmbl_24493: 47387-48297
cDNA
(Sanger)
(ID:Location)		 029_H15.ab1: 47830-50295

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023313_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002728_080 0.0691233433 - - WD-repeat protein, putative [Ricinus communis]
3 Hb_005797_010 0.0700477305 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
4 Hb_000215_300 0.0704375674 - - mitochondrial processing peptidase alpha subunit, putative [Ricinus communis]
5 Hb_000313_220 0.0719534096 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
6 Hb_000976_140 0.0723751311 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
7 Hb_002849_130 0.0749234076 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
8 Hb_004705_170 0.0770744371 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
9 Hb_002374_370 0.0808721503 - - protein with unknown function [Ricinus communis]
10 Hb_004990_010 0.0810801549 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
11 Hb_000116_450 0.0817964746 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]
12 Hb_007472_070 0.0825418557 - - cir, putative [Ricinus communis]
13 Hb_168978_010 0.0830269073 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
14 Hb_000000_150 0.0844437917 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
15 Hb_023371_020 0.0845813872 - - PREDICTED: uncharacterized protein LOC105633512 [Jatropha curcas]
16 Hb_000336_210 0.0848472785 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
17 Hb_000120_170 0.0851398719 - - selenoprotein [Populus trichocarpa]
18 Hb_007481_010 0.0852370475 - - PREDICTED: TBC1 domain family member 22B [Jatropha curcas]
19 Hb_093458_040 0.0860383088 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
20 Hb_006570_080 0.0865149906 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_023313_030 Hb_023313_030 Hb_002728_080 Hb_002728_080 Hb_023313_030--Hb_002728_080 Hb_005797_010 Hb_005797_010 Hb_023313_030--Hb_005797_010 Hb_000215_300 Hb_000215_300 Hb_023313_030--Hb_000215_300 Hb_000313_220 Hb_000313_220 Hb_023313_030--Hb_000313_220 Hb_000976_140 Hb_000976_140 Hb_023313_030--Hb_000976_140 Hb_002849_130 Hb_002849_130 Hb_023313_030--Hb_002849_130 Hb_002989_020 Hb_002989_020 Hb_002728_080--Hb_002989_020 Hb_007481_010 Hb_007481_010 Hb_002728_080--Hb_007481_010 Hb_002728_080--Hb_005797_010 Hb_003683_020 Hb_003683_020 Hb_002728_080--Hb_003683_020 Hb_004990_010 Hb_004990_010 Hb_002728_080--Hb_004990_010 Hb_000046_500 Hb_000046_500 Hb_002728_080--Hb_000046_500 Hb_005797_010--Hb_007481_010 Hb_000139_530 Hb_000139_530 Hb_005797_010--Hb_000139_530 Hb_004102_170 Hb_004102_170 Hb_005797_010--Hb_004102_170 Hb_000009_400 Hb_000009_400 Hb_005797_010--Hb_000009_400 Hb_004705_170 Hb_004705_170 Hb_000215_300--Hb_004705_170 Hb_086063_020 Hb_086063_020 Hb_000215_300--Hb_086063_020 Hb_000345_160 Hb_000345_160 Hb_000215_300--Hb_000345_160 Hb_000258_110 Hb_000258_110 Hb_000215_300--Hb_000258_110 Hb_004037_020 Hb_004037_020 Hb_000215_300--Hb_004037_020 Hb_007472_070 Hb_007472_070 Hb_000215_300--Hb_007472_070 Hb_000313_220--Hb_002849_130 Hb_000313_220--Hb_000976_140 Hb_015807_050 Hb_015807_050 Hb_000313_220--Hb_015807_050 Hb_001959_110 Hb_001959_110 Hb_000313_220--Hb_001959_110 Hb_004452_110 Hb_004452_110 Hb_000313_220--Hb_004452_110 Hb_005730_040 Hb_005730_040 Hb_000313_220--Hb_005730_040 Hb_000976_140--Hb_005730_040 Hb_000976_140--Hb_002849_130 Hb_000976_140--Hb_015807_050 Hb_001922_150 Hb_001922_150 Hb_000976_140--Hb_001922_150 Hb_000170_090 Hb_000170_090 Hb_000976_140--Hb_000170_090 Hb_002849_130--Hb_005730_040 Hb_093458_040 Hb_093458_040 Hb_002849_130--Hb_093458_040 Hb_003428_010 Hb_003428_010 Hb_002849_130--Hb_003428_010 Hb_002849_130--Hb_015807_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.2602 27.8233 32.9495 51.6715 33.1967 24.1213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.3244 30.9942 19.6006 31.5181 31.0181

CAGE analysis