Hb_001329_270

Information

Type -
Description -
Location Contig1329: 191303-192610
Sequence    

Annotation

kegg
ID rcu:RCOM_1343610
description Calcium-activated outward-rectifying potassium channel, putative
nr
ID XP_012082993.1
description PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
swissprot
ID Q9S6Z8
description Two-pore potassium channel 5 OS=Arabidopsis thaliana GN=TPK5 PE=1 SV=1
trembl
ID A0A067K944
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14105 PE=4 SV=1
Gene Ontology
ID GO:0005774
description two-pore potassium channel 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001329_270 0.0 - - PREDICTED: two-pore potassium channel 5 [Jatropha curcas]
2 Hb_001474_020 0.1578701297 - - PREDICTED: uncharacterized protein LOC105650917 [Jatropha curcas]
3 Hb_001054_090 0.1662131993 - - Potassium channel SKOR, putative [Ricinus communis]
4 Hb_132840_160 0.1686529193 - - conserved hypothetical protein [Ricinus communis]
5 Hb_020805_120 0.1688485787 - - PREDICTED: glutamate receptor 3.3 [Jatropha curcas]
6 Hb_001247_270 0.1696659107 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
7 Hb_004837_150 0.1702324962 - - hypothetical protein POPTR_0001s26540g [Populus trichocarpa]
8 Hb_000056_350 0.1733867924 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
9 Hb_019654_110 0.1739259192 - - PREDICTED: F-box protein SKIP23-like [Jatropha curcas]
10 Hb_001699_170 0.1740479024 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000028_340 0.1746066637 - - PREDICTED: potassium channel SKOR-like [Prunus mume]
12 Hb_002151_100 0.1746503592 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
13 Hb_029584_100 0.1755904788 - - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Gossypium arboreum]
14 Hb_002046_060 0.176082921 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
15 Hb_047583_010 0.1767116651 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
16 Hb_006816_480 0.1807411661 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
17 Hb_001123_150 0.181358072 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
18 Hb_002027_170 0.1831516646 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
19 Hb_003006_080 0.1877268531 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]
20 Hb_000465_260 0.1889051064 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT4-like [Jatropha curcas]

Gene co-expression network

sample Hb_001329_270 Hb_001329_270 Hb_001474_020 Hb_001474_020 Hb_001329_270--Hb_001474_020 Hb_001054_090 Hb_001054_090 Hb_001329_270--Hb_001054_090 Hb_132840_160 Hb_132840_160 Hb_001329_270--Hb_132840_160 Hb_020805_120 Hb_020805_120 Hb_001329_270--Hb_020805_120 Hb_001247_270 Hb_001247_270 Hb_001329_270--Hb_001247_270 Hb_004837_150 Hb_004837_150 Hb_001329_270--Hb_004837_150 Hb_011360_110 Hb_011360_110 Hb_001474_020--Hb_011360_110 Hb_001474_020--Hb_132840_160 Hb_002046_060 Hb_002046_060 Hb_001474_020--Hb_002046_060 Hb_002217_500 Hb_002217_500 Hb_001474_020--Hb_002217_500 Hb_006469_070 Hb_006469_070 Hb_001474_020--Hb_006469_070 Hb_023344_110 Hb_023344_110 Hb_001474_020--Hb_023344_110 Hb_004522_030 Hb_004522_030 Hb_001054_090--Hb_004522_030 Hb_009646_010 Hb_009646_010 Hb_001054_090--Hb_009646_010 Hb_003710_020 Hb_003710_020 Hb_001054_090--Hb_003710_020 Hb_047583_010 Hb_047583_010 Hb_001054_090--Hb_047583_010 Hb_001014_190 Hb_001014_190 Hb_001054_090--Hb_001014_190 Hb_080477_080 Hb_080477_080 Hb_001054_090--Hb_080477_080 Hb_132840_160--Hb_011360_110 Hb_132840_160--Hb_002046_060 Hb_003371_070 Hb_003371_070 Hb_132840_160--Hb_003371_070 Hb_000057_130 Hb_000057_130 Hb_132840_160--Hb_000057_130 Hb_000339_020 Hb_000339_020 Hb_132840_160--Hb_000339_020 Hb_031089_050 Hb_031089_050 Hb_020805_120--Hb_031089_050 Hb_000473_120 Hb_000473_120 Hb_020805_120--Hb_000473_120 Hb_003006_080 Hb_003006_080 Hb_020805_120--Hb_003006_080 Hb_000138_060 Hb_000138_060 Hb_020805_120--Hb_000138_060 Hb_000109_190 Hb_000109_190 Hb_020805_120--Hb_000109_190 Hb_002289_150 Hb_002289_150 Hb_020805_120--Hb_002289_150 Hb_029584_100 Hb_029584_100 Hb_001247_270--Hb_029584_100 Hb_009535_030 Hb_009535_030 Hb_001247_270--Hb_009535_030 Hb_000959_120 Hb_000959_120 Hb_001247_270--Hb_000959_120 Hb_001247_270--Hb_003006_080 Hb_001247_270--Hb_004522_030 Hb_073808_010 Hb_073808_010 Hb_001247_270--Hb_073808_010 Hb_006816_480 Hb_006816_480 Hb_004837_150--Hb_006816_480 Hb_002217_090 Hb_002217_090 Hb_004837_150--Hb_002217_090 Hb_001699_170 Hb_001699_170 Hb_004837_150--Hb_001699_170 Hb_000110_300 Hb_000110_300 Hb_004837_150--Hb_000110_300 Hb_004837_150--Hb_002046_060 Hb_001123_150 Hb_001123_150 Hb_004837_150--Hb_001123_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.100258 2.16494 0.454803 3.0951 0.298352 0.0728936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.732526 0.316938 0.322939 1.23313 1.37773

CAGE analysis