Hb_031939_020

Information

Type -
Description -
Location Contig31939: 8701-9458
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33660: 3814-28241
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_031939_020 0.0 - - -
2 Hb_011288_010 0.1903884254 - - hypothetical protein, partial [Pseudomonas fluorescens]
3 Hb_002042_060 0.2573359977 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000000_430 0.2605777215 - - hypothetical protein POPTR_0014s04130g [Populus trichocarpa]
5 Hb_027204_010 0.2780646984 - - -
6 Hb_021254_010 0.299062143 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
7 Hb_000392_510 0.3031592613 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]
8 Hb_006501_140 0.3081889367 - - PREDICTED: MATE efflux family protein 9-like [Jatropha curcas]
9 Hb_129230_010 0.3094327097 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Nicotiana sylvestris]
10 Hb_005588_130 0.3110144091 - - conserved hypothetical protein [Ricinus communis]
11 Hb_004730_010 0.3235716008 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
12 Hb_000805_220 0.3309893959 - - polyprotein [Citrus endogenous pararetrovirus]
13 Hb_000796_050 0.3319770856 - - galactinol synthase [Manihot esculenta]
14 Hb_034953_010 0.3360394317 - - hypothetical protein JCGZ_00031 [Jatropha curcas]
15 Hb_000302_300 0.3365611782 - - PREDICTED: heat shock protein 83 [Populus euphratica]
16 Hb_007137_020 0.3390153765 - - multicopper oxidase, putative [Ricinus communis]
17 Hb_000631_140 0.3415306771 - - PREDICTED: chaperone protein ClpB1 [Jatropha curcas]
18 Hb_002890_350 0.3437575496 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
19 Hb_100526_020 0.3440491715 - - hypothetical protein POPTR_0003s09340g [Populus trichocarpa]
20 Hb_003175_090 0.3447910206 - - hypothetical protein POPTR_0011s01120g [Populus trichocarpa]

Gene co-expression network

sample Hb_031939_020 Hb_031939_020 Hb_011288_010 Hb_011288_010 Hb_031939_020--Hb_011288_010 Hb_002042_060 Hb_002042_060 Hb_031939_020--Hb_002042_060 Hb_000000_430 Hb_000000_430 Hb_031939_020--Hb_000000_430 Hb_027204_010 Hb_027204_010 Hb_031939_020--Hb_027204_010 Hb_021254_010 Hb_021254_010 Hb_031939_020--Hb_021254_010 Hb_000392_510 Hb_000392_510 Hb_031939_020--Hb_000392_510 Hb_042463_050 Hb_042463_050 Hb_011288_010--Hb_042463_050 Hb_009785_020 Hb_009785_020 Hb_011288_010--Hb_009785_020 Hb_024468_040 Hb_024468_040 Hb_011288_010--Hb_024468_040 Hb_167136_010 Hb_167136_010 Hb_011288_010--Hb_167136_010 Hb_011288_010--Hb_027204_010 Hb_005588_130 Hb_005588_130 Hb_002042_060--Hb_005588_130 Hb_004730_010 Hb_004730_010 Hb_002042_060--Hb_004730_010 Hb_000068_040 Hb_000068_040 Hb_002042_060--Hb_000068_040 Hb_034953_010 Hb_034953_010 Hb_002042_060--Hb_034953_010 Hb_009403_010 Hb_009403_010 Hb_002042_060--Hb_009403_010 Hb_000230_550 Hb_000230_550 Hb_000000_430--Hb_000230_550 Hb_000805_220 Hb_000805_220 Hb_000000_430--Hb_000805_220 Hb_009492_020 Hb_009492_020 Hb_000000_430--Hb_009492_020 Hb_003589_100 Hb_003589_100 Hb_000000_430--Hb_003589_100 Hb_000984_110 Hb_000984_110 Hb_000000_430--Hb_000984_110 Hb_001295_050 Hb_001295_050 Hb_000000_430--Hb_001295_050 Hb_065661_010 Hb_065661_010 Hb_027204_010--Hb_065661_010 Hb_027204_010--Hb_024468_040 Hb_000045_060 Hb_000045_060 Hb_027204_010--Hb_000045_060 Hb_181402_010 Hb_181402_010 Hb_027204_010--Hb_181402_010 Hb_027204_010--Hb_000392_510 Hb_000640_280 Hb_000640_280 Hb_027204_010--Hb_000640_280 Hb_000302_300 Hb_000302_300 Hb_021254_010--Hb_000302_300 Hb_000631_140 Hb_000631_140 Hb_021254_010--Hb_000631_140 Hb_006721_070 Hb_006721_070 Hb_021254_010--Hb_006721_070 Hb_006629_020 Hb_006629_020 Hb_021254_010--Hb_006629_020 Hb_078106_010 Hb_078106_010 Hb_021254_010--Hb_078106_010 Hb_006573_010 Hb_006573_010 Hb_021254_010--Hb_006573_010 Hb_000286_180 Hb_000286_180 Hb_000392_510--Hb_000286_180 Hb_007137_020 Hb_007137_020 Hb_000392_510--Hb_007137_020 Hb_001899_040 Hb_001899_040 Hb_000392_510--Hb_001899_040 Hb_002218_060 Hb_002218_060 Hb_000392_510--Hb_002218_060 Hb_009898_060 Hb_009898_060 Hb_000392_510--Hb_009898_060 Hb_000392_510--Hb_000640_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.465615 0 0.208748 0.196182 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.309385

CAGE analysis