Hb_011288_010

Information

Type -
Description -
Location Contig11288: 12121-14451
Sequence    

Annotation

kegg
ID -
description -
nr
ID WP_042943005.1
description hypothetical protein, partial [Pseudomonas fluorescens]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011288_010 0.0 - - hypothetical protein, partial [Pseudomonas fluorescens]
2 Hb_031939_020 0.1903884254 - - -
3 Hb_042463_050 0.2547977207 - - conserved hypothetical protein [Ricinus communis]
4 Hb_009785_020 0.2601695304 - - PREDICTED: nucleolin [Populus euphratica]
5 Hb_024468_040 0.2636455218 - - -
6 Hb_167136_010 0.2657481984 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
7 Hb_027204_010 0.2751862239 - - -
8 Hb_002471_280 0.2877718608 - - PREDICTED: cyclin-SDS [Jatropha curcas]
9 Hb_004372_050 0.287928933 - - putative receptor-like protein kinase [Morus notabilis]
10 Hb_002990_020 0.2967974001 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
11 Hb_129230_010 0.3024932354 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 1-like [Nicotiana sylvestris]
12 Hb_003992_200 0.3095753317 - - -
13 Hb_004643_020 0.3156490298 - - hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
14 Hb_002042_060 0.3167108643 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000392_510 0.3182850565 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]
16 Hb_018105_010 0.3212276783 - - hypothetical protein POPTR_0004s08710g [Populus trichocarpa]
17 Hb_010863_070 0.324236402 - - PREDICTED: glutaredoxin-C11 [Jatropha curcas]
18 Hb_002890_350 0.3267101611 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
19 Hb_001999_050 0.3294003242 rubber biosynthesis Gene Name: CPT7 PREDICTED: dehydrodolichyl diphosphate synthase 2 [Jatropha curcas]
20 Hb_000311_110 0.3328526279 - - ATP-binding cassette transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_011288_010 Hb_011288_010 Hb_031939_020 Hb_031939_020 Hb_011288_010--Hb_031939_020 Hb_042463_050 Hb_042463_050 Hb_011288_010--Hb_042463_050 Hb_009785_020 Hb_009785_020 Hb_011288_010--Hb_009785_020 Hb_024468_040 Hb_024468_040 Hb_011288_010--Hb_024468_040 Hb_167136_010 Hb_167136_010 Hb_011288_010--Hb_167136_010 Hb_027204_010 Hb_027204_010 Hb_011288_010--Hb_027204_010 Hb_002042_060 Hb_002042_060 Hb_031939_020--Hb_002042_060 Hb_000000_430 Hb_000000_430 Hb_031939_020--Hb_000000_430 Hb_031939_020--Hb_027204_010 Hb_021254_010 Hb_021254_010 Hb_031939_020--Hb_021254_010 Hb_000392_510 Hb_000392_510 Hb_031939_020--Hb_000392_510 Hb_004884_210 Hb_004884_210 Hb_042463_050--Hb_004884_210 Hb_042463_050--Hb_024468_040 Hb_172426_010 Hb_172426_010 Hb_042463_050--Hb_172426_010 Hb_004372_050 Hb_004372_050 Hb_042463_050--Hb_004372_050 Hb_001999_050 Hb_001999_050 Hb_042463_050--Hb_001999_050 Hb_002030_050 Hb_002030_050 Hb_042463_050--Hb_002030_050 Hb_009785_020--Hb_167136_010 Hb_009785_020--Hb_004372_050 Hb_002990_020 Hb_002990_020 Hb_009785_020--Hb_002990_020 Hb_002471_280 Hb_002471_280 Hb_009785_020--Hb_002471_280 Hb_002890_350 Hb_002890_350 Hb_009785_020--Hb_002890_350 Hb_004566_050 Hb_004566_050 Hb_009785_020--Hb_004566_050 Hb_024468_040--Hb_027204_010 Hb_132317_010 Hb_132317_010 Hb_024468_040--Hb_132317_010 Hb_000473_160 Hb_000473_160 Hb_024468_040--Hb_000473_160 Hb_007193_050 Hb_007193_050 Hb_024468_040--Hb_007193_050 Hb_006405_040 Hb_006405_040 Hb_024468_040--Hb_006405_040 Hb_167136_010--Hb_002471_280 Hb_167136_010--Hb_004372_050 Hb_167136_010--Hb_002990_020 Hb_004643_020 Hb_004643_020 Hb_167136_010--Hb_004643_020 Hb_000138_180 Hb_000138_180 Hb_167136_010--Hb_000138_180 Hb_065661_010 Hb_065661_010 Hb_027204_010--Hb_065661_010 Hb_000045_060 Hb_000045_060 Hb_027204_010--Hb_000045_060 Hb_181402_010 Hb_181402_010 Hb_027204_010--Hb_181402_010 Hb_027204_010--Hb_000392_510 Hb_000640_280 Hb_000640_280 Hb_027204_010--Hb_000640_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0261583 0 0.00816283 0.0105746 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0398509

CAGE analysis