Hb_000239_080

Information

Type -
Description -
Location Contig239: 188912-190714
Sequence    

Annotation

kegg
ID pop:POPTR_0014s01730g
description POPTRDRAFT_572046; hypothetical protein
nr
ID XP_002320693.1
description hypothetical protein POPTR_0014s01730g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IBS3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s01730g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000239_080 0.0 - - hypothetical protein POPTR_0014s01730g [Populus trichocarpa]
2 Hb_000434_070 0.1947328472 - - PREDICTED: uncharacterized transmembrane protein DDB_G0289901 [Jatropha curcas]
3 Hb_158560_010 0.1964624825 - - PREDICTED: LOW QUALITY PROTEIN: probable acyl-activating enzyme 1, peroxisomal [Jatropha curcas]
4 Hb_001477_020 0.1969834052 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105646886 isoform X3 [Jatropha curcas]
5 Hb_003894_010 0.2007848613 - - unnamed protein product [Vitis vinifera]
6 Hb_040734_010 0.2010152162 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
7 Hb_001579_200 0.2077831818 - - nucleoredoxin, putative [Ricinus communis]
8 Hb_002874_130 0.2126946028 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 9 [Jatropha curcas]
9 Hb_019654_110 0.2127053147 - - PREDICTED: F-box protein SKIP23-like [Jatropha curcas]
10 Hb_000928_090 0.2130075453 - - PREDICTED: septin and tuftelin-interacting protein 1 homolog 1 [Jatropha curcas]
11 Hb_000617_190 0.2148389571 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Jatropha curcas]
12 Hb_003125_180 0.2166464738 - - hypothetical protein JCGZ_26440 [Jatropha curcas]
13 Hb_001123_150 0.2170054865 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
14 Hb_001998_150 0.2172091699 - - hypothetical protein JCGZ_09140 [Jatropha curcas]
15 Hb_000302_200 0.2174316979 - - ornithine cyclodeaminase, putative [Ricinus communis]
16 Hb_003849_280 0.217527894 - - PREDICTED: uncharacterized protein LOC105644977 [Jatropha curcas]
17 Hb_000619_030 0.2179967262 - - unnamed protein product [Vitis vinifera]
18 Hb_006210_010 0.2191918508 - - PREDICTED: probable acyl-activating enzyme 17, peroxisomal isoform X2 [Jatropha curcas]
19 Hb_029879_120 0.2199829242 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001008_130 0.2204332558 transcription factor TF Family: mTERF PREDICTED: cytochrome c1-2, heme protein, mitochondrial-like [Elaeis guineensis]

Gene co-expression network

sample Hb_000239_080 Hb_000239_080 Hb_000434_070 Hb_000434_070 Hb_000239_080--Hb_000434_070 Hb_158560_010 Hb_158560_010 Hb_000239_080--Hb_158560_010 Hb_001477_020 Hb_001477_020 Hb_000239_080--Hb_001477_020 Hb_003894_010 Hb_003894_010 Hb_000239_080--Hb_003894_010 Hb_040734_010 Hb_040734_010 Hb_000239_080--Hb_040734_010 Hb_001579_200 Hb_001579_200 Hb_000239_080--Hb_001579_200 Hb_000928_090 Hb_000928_090 Hb_000434_070--Hb_000928_090 Hb_004223_160 Hb_004223_160 Hb_000434_070--Hb_004223_160 Hb_002400_140 Hb_002400_140 Hb_000434_070--Hb_002400_140 Hb_005832_010 Hb_005832_010 Hb_000434_070--Hb_005832_010 Hb_014720_020 Hb_014720_020 Hb_000434_070--Hb_014720_020 Hb_001085_030 Hb_001085_030 Hb_000434_070--Hb_001085_030 Hb_000648_040 Hb_000648_040 Hb_158560_010--Hb_000648_040 Hb_003417_040 Hb_003417_040 Hb_158560_010--Hb_003417_040 Hb_003849_280 Hb_003849_280 Hb_158560_010--Hb_003849_280 Hb_000614_150 Hb_000614_150 Hb_158560_010--Hb_000614_150 Hb_001080_090 Hb_001080_090 Hb_158560_010--Hb_001080_090 Hb_000110_270 Hb_000110_270 Hb_158560_010--Hb_000110_270 Hb_000200_110 Hb_000200_110 Hb_001477_020--Hb_000200_110 Hb_000220_120 Hb_000220_120 Hb_001477_020--Hb_000220_120 Hb_001477_020--Hb_003849_280 Hb_007012_040 Hb_007012_040 Hb_001477_020--Hb_007012_040 Hb_007245_020 Hb_007245_020 Hb_001477_020--Hb_007245_020 Hb_001124_050 Hb_001124_050 Hb_001477_020--Hb_001124_050 Hb_005116_140 Hb_005116_140 Hb_003894_010--Hb_005116_140 Hb_009252_030 Hb_009252_030 Hb_003894_010--Hb_009252_030 Hb_183086_030 Hb_183086_030 Hb_003894_010--Hb_183086_030 Hb_000418_020 Hb_000418_020 Hb_003894_010--Hb_000418_020 Hb_020586_010 Hb_020586_010 Hb_003894_010--Hb_020586_010 Hb_002367_110 Hb_002367_110 Hb_003894_010--Hb_002367_110 Hb_002820_020 Hb_002820_020 Hb_040734_010--Hb_002820_020 Hb_000619_010 Hb_000619_010 Hb_040734_010--Hb_000619_010 Hb_001454_200 Hb_001454_200 Hb_040734_010--Hb_001454_200 Hb_001951_150 Hb_001951_150 Hb_040734_010--Hb_001951_150 Hb_000179_270 Hb_000179_270 Hb_040734_010--Hb_000179_270 Hb_010128_100 Hb_010128_100 Hb_040734_010--Hb_010128_100 Hb_001411_050 Hb_001411_050 Hb_001579_200--Hb_001411_050 Hb_006916_050 Hb_006916_050 Hb_001579_200--Hb_006916_050 Hb_005571_010 Hb_005571_010 Hb_001579_200--Hb_005571_010 Hb_005914_040 Hb_005914_040 Hb_001579_200--Hb_005914_040 Hb_001411_030 Hb_001411_030 Hb_001579_200--Hb_001411_030 Hb_006846_080 Hb_006846_080 Hb_001579_200--Hb_006846_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0645924 0.241745 0.0591804 0.218236 0.124199 0.0297878
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.118295 0.0930271 0 0.168897 0.282741

CAGE analysis