Hb_001911_070

Information

Type -
Description -
Location Contig1911: 105078-106184
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19062: 106356-106648
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001911_070 0.0 - - -
2 Hb_001817_140 0.2170414164 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
3 Hb_002259_140 0.2170868969 - - -
4 Hb_001623_070 0.2438818974 - - cytochrome B5 isoform 1, putative [Ricinus communis]
5 Hb_003120_100 0.2495400967 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
6 Hb_021906_010 0.2625022853 - - PREDICTED: cysteine proteinase inhibitor-like [Populus euphratica]
7 Hb_000025_440 0.2628189921 - - PREDICTED: ankyrin repeat-containing protein P16F5.05c-like [Populus euphratica]
8 Hb_026740_010 0.2673417227 - - PREDICTED: serine/threonine-protein phosphatase 7 [Jatropha curcas]
9 Hb_000363_270 0.2722897021 - - hypothetical protein PRUPE_ppa024846mg [Prunus persica]
10 Hb_007386_010 0.2787955784 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
11 Hb_005144_070 0.281526423 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004200_030 0.2849962277 - - PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
13 Hb_000975_270 0.2890236618 - - PREDICTED: histone H2B.11-like [Phoenix dactylifera]
14 Hb_001016_070 0.2901710234 - - PREDICTED: putative MO25-like protein At5g47540 [Jatropha curcas]
15 Hb_001754_140 0.2916520601 - - PREDICTED: uncharacterized protein LOC105643419 [Jatropha curcas]
16 Hb_001017_080 0.2922678176 - - hypothetical protein POPTR_0010s06020g [Populus trichocarpa]
17 Hb_008215_030 0.2925827382 - - hypothetical protein 3 [Hevea brasiliensis]
18 Hb_007441_170 0.2973039741 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
19 Hb_002099_010 0.2992749733 - - cysteine proteinase inhibitor 5-like [Cucumis sativus]
20 Hb_004097_040 0.2999115383 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_001911_070 Hb_001911_070 Hb_001817_140 Hb_001817_140 Hb_001911_070--Hb_001817_140 Hb_002259_140 Hb_002259_140 Hb_001911_070--Hb_002259_140 Hb_001623_070 Hb_001623_070 Hb_001911_070--Hb_001623_070 Hb_003120_100 Hb_003120_100 Hb_001911_070--Hb_003120_100 Hb_021906_010 Hb_021906_010 Hb_001911_070--Hb_021906_010 Hb_000025_440 Hb_000025_440 Hb_001911_070--Hb_000025_440 Hb_000363_270 Hb_000363_270 Hb_001817_140--Hb_000363_270 Hb_001016_070 Hb_001016_070 Hb_001817_140--Hb_001016_070 Hb_001754_140 Hb_001754_140 Hb_001817_140--Hb_001754_140 Hb_001817_140--Hb_001623_070 Hb_001102_100 Hb_001102_100 Hb_001817_140--Hb_001102_100 Hb_002259_140--Hb_021906_010 Hb_004200_030 Hb_004200_030 Hb_002259_140--Hb_004200_030 Hb_007386_010 Hb_007386_010 Hb_002259_140--Hb_007386_010 Hb_004097_040 Hb_004097_040 Hb_002259_140--Hb_004097_040 Hb_004241_010 Hb_004241_010 Hb_002259_140--Hb_004241_010 Hb_002890_070 Hb_002890_070 Hb_001623_070--Hb_002890_070 Hb_003376_380 Hb_003376_380 Hb_001623_070--Hb_003376_380 Hb_003398_020 Hb_003398_020 Hb_001623_070--Hb_003398_020 Hb_001439_090 Hb_001439_090 Hb_001623_070--Hb_001439_090 Hb_011609_110 Hb_011609_110 Hb_001623_070--Hb_011609_110 Hb_042871_010 Hb_042871_010 Hb_001623_070--Hb_042871_010 Hb_101319_020 Hb_101319_020 Hb_003120_100--Hb_101319_020 Hb_003120_100--Hb_004200_030 Hb_003120_100--Hb_002259_140 Hb_003120_100--Hb_007386_010 Hb_003178_020 Hb_003178_020 Hb_003120_100--Hb_003178_020 Hb_021906_010--Hb_007386_010 Hb_002099_010 Hb_002099_010 Hb_021906_010--Hb_002099_010 Hb_021906_010--Hb_004200_030 Hb_021906_010--Hb_004097_040 Hb_000175_580 Hb_000175_580 Hb_021906_010--Hb_000175_580 Hb_001017_080 Hb_001017_080 Hb_000025_440--Hb_001017_080 Hb_182005_010 Hb_182005_010 Hb_000025_440--Hb_182005_010 Hb_000239_110 Hb_000239_110 Hb_000025_440--Hb_000239_110 Hb_156503_040 Hb_156503_040 Hb_000025_440--Hb_156503_040 Hb_001022_040 Hb_001022_040 Hb_000025_440--Hb_001022_040 Hb_000500_210 Hb_000500_210 Hb_000025_440--Hb_000500_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0461648 0 0.180635 0.208201 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.214727 0.5906 0 0.0346887 0

CAGE analysis