Hb_101319_020

Information

Type -
Description -
Location Contig101319: 20003-22008
Sequence    

Annotation

kegg
ID pop:POPTR_0016s02630g
description hypothetical protein
nr
ID XP_012079624.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
swissprot
ID Q9LQ14
description Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2
trembl
ID A0A067L2E6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24381 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00674: 20967-21216
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101319_020 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
2 Hb_003120_100 0.2127892277 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
3 Hb_004200_030 0.2301428198 - - PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
4 Hb_007386_010 0.2428714387 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
5 Hb_003602_010 0.2490548665 - - serine hydroxymethyltransferase, partial [Populus alba]
6 Hb_168326_010 0.2499983919 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Populus euphratica]
7 Hb_002874_020 0.2841320814 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105637459 isoform X1 [Jatropha curcas]
8 Hb_002099_010 0.2947036161 - - cysteine proteinase inhibitor 5-like [Cucumis sativus]
9 Hb_033594_070 0.2965014827 - - PREDICTED: uncharacterized protein LOC105787685 isoform X1 [Gossypium raimondii]
10 Hb_021906_010 0.2967189655 - - PREDICTED: cysteine proteinase inhibitor-like [Populus euphratica]
11 Hb_100743_010 0.3029242214 - - hypothetical protein JCGZ_17104 [Jatropha curcas]
12 Hb_002259_140 0.3039509011 - - -
13 Hb_000173_050 0.3173179774 - - basic 7S globulin 2 precursor small subunit, putative [Ricinus communis]
14 Hb_006970_140 0.3289555688 - - PREDICTED: histone H3.2-like [Solanum lycopersicum]
15 Hb_003178_020 0.3316043932 transcription factor TF Family: B3 conserved hypothetical protein [Ricinus communis]
16 Hb_001529_070 0.333955745 transcription factor TF Family: AP2 hypothetical protein POPTR_0018s09900g [Populus trichocarpa]
17 Hb_180924_010 0.3360740181 - - CPI-4 [Morus alba var. atropurpurea]
18 Hb_004162_230 0.3371839395 - - PREDICTED: histone H2B [Jatropha curcas]
19 Hb_001195_300 0.338212738 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
20 Hb_000181_190 0.3405104695 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]

Gene co-expression network

sample Hb_101319_020 Hb_101319_020 Hb_003120_100 Hb_003120_100 Hb_101319_020--Hb_003120_100 Hb_004200_030 Hb_004200_030 Hb_101319_020--Hb_004200_030 Hb_007386_010 Hb_007386_010 Hb_101319_020--Hb_007386_010 Hb_003602_010 Hb_003602_010 Hb_101319_020--Hb_003602_010 Hb_168326_010 Hb_168326_010 Hb_101319_020--Hb_168326_010 Hb_002874_020 Hb_002874_020 Hb_101319_020--Hb_002874_020 Hb_003120_100--Hb_004200_030 Hb_002259_140 Hb_002259_140 Hb_003120_100--Hb_002259_140 Hb_003120_100--Hb_007386_010 Hb_001911_070 Hb_001911_070 Hb_003120_100--Hb_001911_070 Hb_003178_020 Hb_003178_020 Hb_003120_100--Hb_003178_020 Hb_004200_030--Hb_007386_010 Hb_004200_030--Hb_002259_140 Hb_021906_010 Hb_021906_010 Hb_004200_030--Hb_021906_010 Hb_004097_040 Hb_004097_040 Hb_004200_030--Hb_004097_040 Hb_044555_010 Hb_044555_010 Hb_004200_030--Hb_044555_010 Hb_002081_170 Hb_002081_170 Hb_004200_030--Hb_002081_170 Hb_007386_010--Hb_021906_010 Hb_002099_010 Hb_002099_010 Hb_007386_010--Hb_002099_010 Hb_007386_010--Hb_002259_140 Hb_007386_010--Hb_004097_040 Hb_007386_010--Hb_044555_010 Hb_000085_130 Hb_000085_130 Hb_003602_010--Hb_000085_130 Hb_100743_010 Hb_100743_010 Hb_003602_010--Hb_100743_010 Hb_003602_010--Hb_002874_020 Hb_074836_010 Hb_074836_010 Hb_003602_010--Hb_074836_010 Hb_003602_010--Hb_168326_010 Hb_168326_010--Hb_074836_010 Hb_004374_180 Hb_004374_180 Hb_168326_010--Hb_004374_180 Hb_000959_310 Hb_000959_310 Hb_168326_010--Hb_000959_310 Hb_002631_090 Hb_002631_090 Hb_168326_010--Hb_002631_090 Hb_033594_070 Hb_033594_070 Hb_168326_010--Hb_033594_070 Hb_000603_010 Hb_000603_010 Hb_002874_020--Hb_000603_010 Hb_001584_030 Hb_001584_030 Hb_002874_020--Hb_001584_030 Hb_001355_120 Hb_001355_120 Hb_002874_020--Hb_001355_120 Hb_000109_230 Hb_000109_230 Hb_002874_020--Hb_000109_230 Hb_001514_260 Hb_001514_260 Hb_002874_020--Hb_001514_260 Hb_001431_100 Hb_001431_100 Hb_002874_020--Hb_001431_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.187395 0.132539 0 0.0136533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.177383 0.111635 0 0 0

CAGE analysis