Hb_003602_010

Information

Type -
Description -
Location Contig3602: 7333-8454
Sequence    

Annotation

kegg
ID -
description -
nr
ID AFR41477.1
description serine hydroxymethyltransferase, partial [Populus alba]
swissprot
ID -
description -
trembl
ID J9RVC4
description Serine hydroxymethyltransferase (Fragment) OS=Populus alba GN=SHMT3 PE=3 SV=1
Gene Ontology
ID GO:0009536
description serine mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003602_010 0.0 - - serine hydroxymethyltransferase, partial [Populus alba]
2 Hb_101319_020 0.2490548665 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
3 Hb_000085_130 0.2741419202 - - -
4 Hb_100743_010 0.2758840959 - - hypothetical protein JCGZ_17104 [Jatropha curcas]
5 Hb_002874_020 0.2838620464 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105637459 isoform X1 [Jatropha curcas]
6 Hb_074836_010 0.2891993007 - - conserved hypothetical protein [Ricinus communis]
7 Hb_168326_010 0.3140959946 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Populus euphratica]
8 Hb_000123_270 0.3154538446 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000948_200 0.3181953067 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
10 Hb_001517_040 0.318315311 - - -
11 Hb_003120_100 0.3196520146 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
12 Hb_007210_020 0.3239242961 - - PREDICTED: hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like [Solanum tuberosum]
13 Hb_164255_010 0.3248682073 - - PREDICTED: aspartate-semialdehyde dehydrogenase [Jatropha curcas]
14 Hb_001355_120 0.3274978529 - - cytochrome P450, putative [Ricinus communis]
15 Hb_004200_030 0.3296146664 - - PREDICTED: SWR1 complex subunit 6-like isoform X1 [Citrus sinensis]
16 Hb_073799_010 0.3321434036 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000109_230 0.3359269785 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003078_060 0.338153839 - - 60S ribosomal protein L32, putative [Ricinus communis]
19 Hb_002025_210 0.3405284064 - - -
20 Hb_009393_190 0.3415690747 - - PREDICTED: E3 ubiquitin-protein ligase AIP2-like [Jatropha curcas]

Gene co-expression network

sample Hb_003602_010 Hb_003602_010 Hb_101319_020 Hb_101319_020 Hb_003602_010--Hb_101319_020 Hb_000085_130 Hb_000085_130 Hb_003602_010--Hb_000085_130 Hb_100743_010 Hb_100743_010 Hb_003602_010--Hb_100743_010 Hb_002874_020 Hb_002874_020 Hb_003602_010--Hb_002874_020 Hb_074836_010 Hb_074836_010 Hb_003602_010--Hb_074836_010 Hb_168326_010 Hb_168326_010 Hb_003602_010--Hb_168326_010 Hb_003120_100 Hb_003120_100 Hb_101319_020--Hb_003120_100 Hb_004200_030 Hb_004200_030 Hb_101319_020--Hb_004200_030 Hb_007386_010 Hb_007386_010 Hb_101319_020--Hb_007386_010 Hb_101319_020--Hb_168326_010 Hb_101319_020--Hb_002874_020 Hb_001712_080 Hb_001712_080 Hb_000085_130--Hb_001712_080 Hb_000981_040 Hb_000981_040 Hb_000085_130--Hb_000981_040 Hb_013394_100 Hb_013394_100 Hb_000085_130--Hb_013394_100 Hb_073799_010 Hb_073799_010 Hb_000085_130--Hb_073799_010 Hb_095192_010 Hb_095192_010 Hb_000085_130--Hb_095192_010 Hb_005928_070 Hb_005928_070 Hb_000085_130--Hb_005928_070 Hb_000184_210 Hb_000184_210 Hb_100743_010--Hb_000184_210 Hb_000352_290 Hb_000352_290 Hb_100743_010--Hb_000352_290 Hb_001842_050 Hb_001842_050 Hb_100743_010--Hb_001842_050 Hb_110390_010 Hb_110390_010 Hb_100743_010--Hb_110390_010 Hb_000123_270 Hb_000123_270 Hb_100743_010--Hb_000123_270 Hb_000948_200 Hb_000948_200 Hb_100743_010--Hb_000948_200 Hb_000603_010 Hb_000603_010 Hb_002874_020--Hb_000603_010 Hb_001584_030 Hb_001584_030 Hb_002874_020--Hb_001584_030 Hb_001355_120 Hb_001355_120 Hb_002874_020--Hb_001355_120 Hb_000109_230 Hb_000109_230 Hb_002874_020--Hb_000109_230 Hb_001514_260 Hb_001514_260 Hb_002874_020--Hb_001514_260 Hb_001431_100 Hb_001431_100 Hb_002874_020--Hb_001431_100 Hb_000926_230 Hb_000926_230 Hb_074836_010--Hb_000926_230 Hb_009620_090 Hb_009620_090 Hb_074836_010--Hb_009620_090 Hb_155541_010 Hb_155541_010 Hb_074836_010--Hb_155541_010 Hb_164255_010 Hb_164255_010 Hb_074836_010--Hb_164255_010 Hb_001545_050 Hb_001545_050 Hb_074836_010--Hb_001545_050 Hb_118228_010 Hb_118228_010 Hb_074836_010--Hb_118228_010 Hb_168326_010--Hb_074836_010 Hb_004374_180 Hb_004374_180 Hb_168326_010--Hb_004374_180 Hb_000959_310 Hb_000959_310 Hb_168326_010--Hb_000959_310 Hb_002631_090 Hb_002631_090 Hb_168326_010--Hb_002631_090 Hb_033594_070 Hb_033594_070 Hb_168326_010--Hb_033594_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.111887 0.214305 0 0.0789004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.113652 0.0893061 0 0 0

CAGE analysis