Hb_095192_010

Information

Type -
Description -
Location Contig95192: 11-575
Sequence    

Annotation

kegg
ID csv:101218085
description uncharacterized LOC101218085
nr
ID CAN74955.1
description hypothetical protein VITISV_043980 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BSC8
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_095192_010 0.0 - - hypothetical protein VITISV_043980 [Vitis vinifera]
2 Hb_002168_010 0.1841659338 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
3 Hb_000981_040 0.1901516821 - - -
4 Hb_000317_140 0.1917141082 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
5 Hb_179812_010 0.2133072731 - - TdcA1-ORF1-ORF2 [Daucus carota]
6 Hb_000015_070 0.218367301 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]
7 Hb_013394_100 0.2196312368 - - PREDICTED: uncharacterized protein LOC105135144 [Populus euphratica]
8 Hb_002079_040 0.2200731636 - - hypothetical protein VITISV_018542 [Vitis vinifera]
9 Hb_000074_060 0.2230263408 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
10 Hb_007763_050 0.2236683764 - - hypothetical protein L484_012752 [Morus notabilis]
11 Hb_000994_110 0.2252421512 - - conserved hypothetical protein [Ricinus communis]
12 Hb_183522_010 0.2257150888 - - Far upstream element-binding protein, putative [Ricinus communis]
13 Hb_002656_020 0.2279033956 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
14 Hb_150023_010 0.2298820476 - - 50S ribosomal protein L2, putative [Ricinus communis]
15 Hb_166480_010 0.2352211816 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
16 Hb_001427_020 0.2358469105 - - hypothetical protein JCGZ_07310 [Jatropha curcas]
17 Hb_059978_010 0.2383895381 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
18 Hb_000327_290 0.2384090202 - - Histone H4 [Triticum urartu]
19 Hb_004669_030 0.239731033 - - -
20 Hb_010504_030 0.2398188629 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]

Gene co-expression network

sample Hb_095192_010 Hb_095192_010 Hb_002168_010 Hb_002168_010 Hb_095192_010--Hb_002168_010 Hb_000981_040 Hb_000981_040 Hb_095192_010--Hb_000981_040 Hb_000317_140 Hb_000317_140 Hb_095192_010--Hb_000317_140 Hb_179812_010 Hb_179812_010 Hb_095192_010--Hb_179812_010 Hb_000015_070 Hb_000015_070 Hb_095192_010--Hb_000015_070 Hb_013394_100 Hb_013394_100 Hb_095192_010--Hb_013394_100 Hb_002168_010--Hb_000317_140 Hb_007763_050 Hb_007763_050 Hb_002168_010--Hb_007763_050 Hb_004669_030 Hb_004669_030 Hb_002168_010--Hb_004669_030 Hb_000641_020 Hb_000641_020 Hb_002168_010--Hb_000641_020 Hb_002168_010--Hb_000015_070 Hb_000635_070 Hb_000635_070 Hb_002168_010--Hb_000635_070 Hb_000085_130 Hb_000085_130 Hb_000981_040--Hb_000085_130 Hb_000981_040--Hb_000317_140 Hb_003695_010 Hb_003695_010 Hb_000981_040--Hb_003695_010 Hb_000981_040--Hb_007763_050 Hb_000981_040--Hb_002168_010 Hb_146675_010 Hb_146675_010 Hb_000317_140--Hb_146675_010 Hb_000317_140--Hb_000015_070 Hb_004709_020 Hb_004709_020 Hb_000317_140--Hb_004709_020 Hb_004466_060 Hb_004466_060 Hb_000317_140--Hb_004466_060 Hb_150023_010 Hb_150023_010 Hb_000317_140--Hb_150023_010 Hb_005542_090 Hb_005542_090 Hb_179812_010--Hb_005542_090 Hb_004195_230 Hb_004195_230 Hb_179812_010--Hb_004195_230 Hb_002388_010 Hb_002388_010 Hb_179812_010--Hb_002388_010 Hb_002687_080 Hb_002687_080 Hb_179812_010--Hb_002687_080 Hb_178620_010 Hb_178620_010 Hb_179812_010--Hb_178620_010 Hb_150766_020 Hb_150766_020 Hb_179812_010--Hb_150766_020 Hb_001396_250 Hb_001396_250 Hb_000015_070--Hb_001396_250 Hb_003371_170 Hb_003371_170 Hb_000015_070--Hb_003371_170 Hb_108227_010 Hb_108227_010 Hb_000015_070--Hb_108227_010 Hb_166480_010 Hb_166480_010 Hb_000015_070--Hb_166480_010 Hb_011214_100 Hb_011214_100 Hb_000015_070--Hb_011214_100 Hb_012675_080 Hb_012675_080 Hb_000015_070--Hb_012675_080 Hb_182713_020 Hb_182713_020 Hb_013394_100--Hb_182713_020 Hb_000789_150 Hb_000789_150 Hb_013394_100--Hb_000789_150 Hb_099298_010 Hb_099298_010 Hb_013394_100--Hb_099298_010 Hb_002079_040 Hb_002079_040 Hb_013394_100--Hb_002079_040 Hb_011200_010 Hb_011200_010 Hb_013394_100--Hb_011200_010 Hb_013394_100--Hb_108227_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.187038 0 0.333612 1.23416 0.205075 1.45008
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.491603 0.482816 0 0.119859 0.182619

CAGE analysis