Hb_000981_040

Information

Type -
Description -
Location Contig981: 105617-106576
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000981_040 0.0 - - -
2 Hb_095192_010 0.1901516821 - - hypothetical protein VITISV_043980 [Vitis vinifera]
3 Hb_000085_130 0.234255554 - - -
4 Hb_000317_140 0.2400192019 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
5 Hb_003695_010 0.240051516 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
6 Hb_007763_050 0.2401476963 - - hypothetical protein L484_012752 [Morus notabilis]
7 Hb_002168_010 0.241372579 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]
8 Hb_032258_020 0.2445420259 - - PREDICTED: amidase 1-like isoform X2 [Malus domestica]
9 Hb_001712_080 0.2532916255 - - -
10 Hb_003656_150 0.2557307705 - - -
11 Hb_000289_080 0.2629171655 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010565_040 0.2633281145 - - hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]
13 Hb_012675_080 0.2635388818 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Populus euphratica]
14 Hb_002918_190 0.2648113909 - - Uncharacterized protein TCM_029816 [Theobroma cacao]
15 Hb_002079_040 0.2658324001 - - hypothetical protein VITISV_018542 [Vitis vinifera]
16 Hb_179812_010 0.2665871897 - - TdcA1-ORF1-ORF2 [Daucus carota]
17 Hb_166480_010 0.2672543612 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis melo]
18 Hb_150766_020 0.272478866 - - hypothetical protein VITISV_030841 [Vitis vinifera]
19 Hb_183522_010 0.2731023481 - - Far upstream element-binding protein, putative [Ricinus communis]
20 Hb_000015_070 0.2745689586 - - hypothetical protein POPTR_0001s22690g [Populus trichocarpa]

Gene co-expression network

sample Hb_000981_040 Hb_000981_040 Hb_095192_010 Hb_095192_010 Hb_000981_040--Hb_095192_010 Hb_000085_130 Hb_000085_130 Hb_000981_040--Hb_000085_130 Hb_000317_140 Hb_000317_140 Hb_000981_040--Hb_000317_140 Hb_003695_010 Hb_003695_010 Hb_000981_040--Hb_003695_010 Hb_007763_050 Hb_007763_050 Hb_000981_040--Hb_007763_050 Hb_002168_010 Hb_002168_010 Hb_000981_040--Hb_002168_010 Hb_095192_010--Hb_002168_010 Hb_095192_010--Hb_000317_140 Hb_179812_010 Hb_179812_010 Hb_095192_010--Hb_179812_010 Hb_000015_070 Hb_000015_070 Hb_095192_010--Hb_000015_070 Hb_013394_100 Hb_013394_100 Hb_095192_010--Hb_013394_100 Hb_001712_080 Hb_001712_080 Hb_000085_130--Hb_001712_080 Hb_000085_130--Hb_013394_100 Hb_073799_010 Hb_073799_010 Hb_000085_130--Hb_073799_010 Hb_000085_130--Hb_095192_010 Hb_005928_070 Hb_005928_070 Hb_000085_130--Hb_005928_070 Hb_000317_140--Hb_002168_010 Hb_146675_010 Hb_146675_010 Hb_000317_140--Hb_146675_010 Hb_000317_140--Hb_000015_070 Hb_004709_020 Hb_004709_020 Hb_000317_140--Hb_004709_020 Hb_004466_060 Hb_004466_060 Hb_000317_140--Hb_004466_060 Hb_150023_010 Hb_150023_010 Hb_000317_140--Hb_150023_010 Hb_116632_010 Hb_116632_010 Hb_003695_010--Hb_116632_010 Hb_017462_010 Hb_017462_010 Hb_003695_010--Hb_017462_010 Hb_000204_020 Hb_000204_020 Hb_003695_010--Hb_000204_020 Hb_013818_050 Hb_013818_050 Hb_003695_010--Hb_013818_050 Hb_000289_080 Hb_000289_080 Hb_003695_010--Hb_000289_080 Hb_166480_010 Hb_166480_010 Hb_007763_050--Hb_166480_010 Hb_007763_050--Hb_002168_010 Hb_010368_030 Hb_010368_030 Hb_007763_050--Hb_010368_030 Hb_007763_050--Hb_000015_070 Hb_001396_250 Hb_001396_250 Hb_007763_050--Hb_001396_250 Hb_175976_010 Hb_175976_010 Hb_007763_050--Hb_175976_010 Hb_004669_030 Hb_004669_030 Hb_002168_010--Hb_004669_030 Hb_000641_020 Hb_000641_020 Hb_002168_010--Hb_000641_020 Hb_002168_010--Hb_000015_070 Hb_000635_070 Hb_000635_070 Hb_002168_010--Hb_000635_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175987 0 2.50347 6.46003 0.335048 11.7856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.99084 1.96777 0 1.2219 0.494049

CAGE analysis