Hb_013818_050

Information

Type -
Description -
Location Contig13818: 21313-21971
Sequence    

Annotation

kegg
ID rcu:RCOM_0137700
description hypothetical protein
nr
ID XP_012066063.1
description PREDICTED: uncharacterized protein LOC105629143 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L705
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25219 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10513: 21295-21591
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_013818_050 0.0 - - PREDICTED: uncharacterized protein LOC105629143 isoform X2 [Jatropha curcas]
2 Hb_012052_010 0.2103533507 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
3 Hb_001427_060 0.2332912747 - - -
4 Hb_017462_010 0.233842779 - - -
5 Hb_007484_040 0.2432701183 - - -
6 Hb_003964_090 0.2449582166 - - PREDICTED: 14-3-3-like protein GF14 iota [Jatropha curcas]
7 Hb_014834_040 0.251627945 - - hypothetical protein JCGZ_03409 [Jatropha curcas]
8 Hb_003581_010 0.2539088221 - - hypothetical protein VITISV_004687 [Vitis vinifera]
9 Hb_000265_130 0.2579828493 - - -
10 Hb_000007_460 0.2599457375 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
11 Hb_116632_010 0.2603969822 - - unnamed protein product [Vitis vinifera]
12 Hb_003695_010 0.2615924144 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
13 Hb_000028_210 0.2617594428 - - hypothetical protein CISIN_1g0103302mg, partial [Citrus sinensis]
14 Hb_000001_040 0.2633678472 - - unnamed protein product [Coffea canephora]
15 Hb_005085_030 0.2642384987 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
16 Hb_000656_100 0.2645356139 - - PREDICTED: uncharacterized protein LOC105633651 [Jatropha curcas]
17 Hb_006846_140 0.2648254998 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000832_240 0.2659911557 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000157_080 0.2672035792 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
20 Hb_027472_030 0.2674386783 - - RNA helicase 36, partial [Manihot esculenta]

Gene co-expression network

sample Hb_013818_050 Hb_013818_050 Hb_012052_010 Hb_012052_010 Hb_013818_050--Hb_012052_010 Hb_001427_060 Hb_001427_060 Hb_013818_050--Hb_001427_060 Hb_017462_010 Hb_017462_010 Hb_013818_050--Hb_017462_010 Hb_007484_040 Hb_007484_040 Hb_013818_050--Hb_007484_040 Hb_003964_090 Hb_003964_090 Hb_013818_050--Hb_003964_090 Hb_014834_040 Hb_014834_040 Hb_013818_050--Hb_014834_040 Hb_027472_030 Hb_027472_030 Hb_012052_010--Hb_027472_030 Hb_000007_460 Hb_000007_460 Hb_012052_010--Hb_000007_460 Hb_000161_120 Hb_000161_120 Hb_012052_010--Hb_000161_120 Hb_033363_070 Hb_033363_070 Hb_012052_010--Hb_033363_070 Hb_003581_010 Hb_003581_010 Hb_012052_010--Hb_003581_010 Hb_005054_070 Hb_005054_070 Hb_012052_010--Hb_005054_070 Hb_075964_010 Hb_075964_010 Hb_001427_060--Hb_075964_010 Hb_001427_060--Hb_000007_460 Hb_001427_060--Hb_003581_010 Hb_068014_010 Hb_068014_010 Hb_001427_060--Hb_068014_010 Hb_001427_060--Hb_007484_040 Hb_013691_030 Hb_013691_030 Hb_001427_060--Hb_013691_030 Hb_116632_010 Hb_116632_010 Hb_017462_010--Hb_116632_010 Hb_015026_150 Hb_015026_150 Hb_017462_010--Hb_015026_150 Hb_002784_070 Hb_002784_070 Hb_017462_010--Hb_002784_070 Hb_007188_020 Hb_007188_020 Hb_017462_010--Hb_007188_020 Hb_017462_010--Hb_007484_040 Hb_017462_010--Hb_014834_040 Hb_007484_040--Hb_116632_010 Hb_007484_040--Hb_003581_010 Hb_168737_010 Hb_168737_010 Hb_007484_040--Hb_168737_010 Hb_000265_130 Hb_000265_130 Hb_007484_040--Hb_000265_130 Hb_007484_040--Hb_013691_030 Hb_005839_050 Hb_005839_050 Hb_003964_090--Hb_005839_050 Hb_049944_010 Hb_049944_010 Hb_003964_090--Hb_049944_010 Hb_003964_090--Hb_012052_010 Hb_003964_090--Hb_001427_060 Hb_000656_100 Hb_000656_100 Hb_003964_090--Hb_000656_100 Hb_001571_110 Hb_001571_110 Hb_014834_040--Hb_001571_110 Hb_042710_010 Hb_042710_010 Hb_014834_040--Hb_042710_010 Hb_098852_010 Hb_098852_010 Hb_014834_040--Hb_098852_010 Hb_132180_010 Hb_132180_010 Hb_014834_040--Hb_132180_010 Hb_020035_020 Hb_020035_020 Hb_014834_040--Hb_020035_020 Hb_006995_040 Hb_006995_040 Hb_014834_040--Hb_006995_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.272318 0.186449 0.351553 2.30902 1.13284 10.0084
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.43652 3.93382 0 4.33682 0.527801

CAGE analysis