Hb_027472_030

Information

Type -
Description -
Location Contig27472: 5413-7884
Sequence    

Annotation

kegg
ID rcu:RCOM_1574630
description dead box ATP-dependent RNA helicase, putative
nr
ID AIU49475.1
description RNA helicase 36, partial [Manihot esculenta]
swissprot
ID Q9SA27
description DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana GN=RH36 PE=2 SV=1
trembl
ID A0A097PN69
description RNA helicase 36 (Fragment) OS=Manihot esculenta PE=2 SV=1
Gene Ontology
ID GO:0097159
description rna helicase partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28754: 7318-7924
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_027472_030 0.0 - - RNA helicase 36, partial [Manihot esculenta]
2 Hb_012052_010 0.1421991085 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
3 Hb_005305_060 0.1952315563 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
4 Hb_073367_010 0.195624919 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
5 Hb_021576_060 0.2042371984 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000832_240 0.2043550389 - - conserved hypothetical protein [Ricinus communis]
7 Hb_028639_050 0.2087475029 - - Anopheles gambiae str. PEST AGAP012660-PA [Anopheles gambiae str. PEST]
8 Hb_004712_180 0.2156559308 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000107_140 0.2163377812 - - -
10 Hb_004502_050 0.2167320709 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
11 Hb_126112_010 0.2215823171 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
12 Hb_000329_770 0.2273573866 - - conserved hypothetical protein [Ricinus communis]
13 Hb_033363_070 0.2312799531 - - PREDICTED: LOW QUALITY PROTEIN: methionine aminopeptidase 1B, chloroplastic, partial [Populus euphratica]
14 Hb_029888_020 0.2325251252 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
15 Hb_005839_050 0.2325432834 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
16 Hb_001057_050 0.2333948695 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
17 Hb_000062_420 0.2343958456 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003041_060 0.2347471129 - - -
19 Hb_049944_010 0.2351376404 - - transducin family protein [Populus trichocarpa]
20 Hb_136731_010 0.2355682259 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_027472_030 Hb_027472_030 Hb_012052_010 Hb_012052_010 Hb_027472_030--Hb_012052_010 Hb_005305_060 Hb_005305_060 Hb_027472_030--Hb_005305_060 Hb_073367_010 Hb_073367_010 Hb_027472_030--Hb_073367_010 Hb_021576_060 Hb_021576_060 Hb_027472_030--Hb_021576_060 Hb_000832_240 Hb_000832_240 Hb_027472_030--Hb_000832_240 Hb_028639_050 Hb_028639_050 Hb_027472_030--Hb_028639_050 Hb_000007_460 Hb_000007_460 Hb_012052_010--Hb_000007_460 Hb_000161_120 Hb_000161_120 Hb_012052_010--Hb_000161_120 Hb_033363_070 Hb_033363_070 Hb_012052_010--Hb_033363_070 Hb_003581_010 Hb_003581_010 Hb_012052_010--Hb_003581_010 Hb_005054_070 Hb_005054_070 Hb_012052_010--Hb_005054_070 Hb_144898_010 Hb_144898_010 Hb_005305_060--Hb_144898_010 Hb_000329_770 Hb_000329_770 Hb_005305_060--Hb_000329_770 Hb_027445_060 Hb_027445_060 Hb_005305_060--Hb_027445_060 Hb_001722_020 Hb_001722_020 Hb_005305_060--Hb_001722_020 Hb_115919_010 Hb_115919_010 Hb_005305_060--Hb_115919_010 Hb_005965_010 Hb_005965_010 Hb_005305_060--Hb_005965_010 Hb_000622_100 Hb_000622_100 Hb_073367_010--Hb_000622_100 Hb_000065_080 Hb_000065_080 Hb_073367_010--Hb_000065_080 Hb_004712_180 Hb_004712_180 Hb_073367_010--Hb_004712_180 Hb_011174_010 Hb_011174_010 Hb_073367_010--Hb_011174_010 Hb_003106_130 Hb_003106_130 Hb_073367_010--Hb_003106_130 Hb_002235_150 Hb_002235_150 Hb_073367_010--Hb_002235_150 Hb_035746_010 Hb_035746_010 Hb_021576_060--Hb_035746_010 Hb_000331_500 Hb_000331_500 Hb_021576_060--Hb_000331_500 Hb_021576_060--Hb_012052_010 Hb_120221_010 Hb_120221_010 Hb_021576_060--Hb_120221_010 Hb_001824_020 Hb_001824_020 Hb_021576_060--Hb_001824_020 Hb_168737_010 Hb_168737_010 Hb_000832_240--Hb_168737_010 Hb_000122_030 Hb_000122_030 Hb_000832_240--Hb_000122_030 Hb_121550_010 Hb_121550_010 Hb_000832_240--Hb_121550_010 Hb_001057_050 Hb_001057_050 Hb_000832_240--Hb_001057_050 Hb_000001_040 Hb_000001_040 Hb_000832_240--Hb_000001_040 Hb_000832_240--Hb_005305_060 Hb_028639_050--Hb_000329_770 Hb_000453_260 Hb_000453_260 Hb_028639_050--Hb_000453_260 Hb_004502_050 Hb_004502_050 Hb_028639_050--Hb_004502_050 Hb_028639_050--Hb_005305_060 Hb_002197_030 Hb_002197_030 Hb_028639_050--Hb_002197_030 Hb_013405_130 Hb_013405_130 Hb_028639_050--Hb_013405_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.103351 0.0691531 0.0192915 0.0801024 0.185501 0.793652
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.39021 0.394554 0 0.0529927 0.0891705

CAGE analysis