Hb_021576_060

Information

Type -
Description -
Location Contig21576: 23739-24050
Sequence    

Annotation

kegg
ID rcu:RCOM_0920860
description hypothetical protein
nr
ID XP_002515422.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RNV3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0920860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021576_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_027472_030 0.2042371984 - - RNA helicase 36, partial [Manihot esculenta]
3 Hb_035746_010 0.2112499062 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
4 Hb_000331_500 0.2116998411 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
5 Hb_012052_010 0.2196297473 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
6 Hb_120221_010 0.219958802 - - -
7 Hb_001824_020 0.2237067627 - - nucleotide binding protein, putative [Ricinus communis]
8 Hb_000107_140 0.2238881704 - - -
9 Hb_012305_040 0.2254928888 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]
10 Hb_019282_010 0.2375493423 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
11 Hb_073367_010 0.2424167131 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
12 Hb_002141_020 0.2453002309 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
13 Hb_001057_050 0.2475817296 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
14 Hb_000122_030 0.2478353484 - - PREDICTED: uncharacterized protein LOC104606081, partial [Nelumbo nucifera]
15 Hb_005305_060 0.2480047389 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
16 Hb_003746_060 0.2488832229 - - PREDICTED: DTW domain-containing protein 2 [Jatropha curcas]
17 Hb_000001_040 0.2518110522 - - unnamed protein product [Coffea canephora]
18 Hb_126112_010 0.2525521703 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
19 Hb_004712_180 0.2526566807 - - conserved hypothetical protein [Ricinus communis]
20 Hb_014834_140 0.2559403299 - - Uncharacterized protein TCM_015942 [Theobroma cacao]

Gene co-expression network

sample Hb_021576_060 Hb_021576_060 Hb_027472_030 Hb_027472_030 Hb_021576_060--Hb_027472_030 Hb_035746_010 Hb_035746_010 Hb_021576_060--Hb_035746_010 Hb_000331_500 Hb_000331_500 Hb_021576_060--Hb_000331_500 Hb_012052_010 Hb_012052_010 Hb_021576_060--Hb_012052_010 Hb_120221_010 Hb_120221_010 Hb_021576_060--Hb_120221_010 Hb_001824_020 Hb_001824_020 Hb_021576_060--Hb_001824_020 Hb_027472_030--Hb_012052_010 Hb_005305_060 Hb_005305_060 Hb_027472_030--Hb_005305_060 Hb_073367_010 Hb_073367_010 Hb_027472_030--Hb_073367_010 Hb_000832_240 Hb_000832_240 Hb_027472_030--Hb_000832_240 Hb_028639_050 Hb_028639_050 Hb_027472_030--Hb_028639_050 Hb_003746_060 Hb_003746_060 Hb_035746_010--Hb_003746_060 Hb_007333_010 Hb_007333_010 Hb_035746_010--Hb_007333_010 Hb_005511_100 Hb_005511_100 Hb_035746_010--Hb_005511_100 Hb_029888_020 Hb_029888_020 Hb_035746_010--Hb_029888_020 Hb_003446_050 Hb_003446_050 Hb_035746_010--Hb_003446_050 Hb_002141_020 Hb_002141_020 Hb_000331_500--Hb_002141_020 Hb_136765_010 Hb_136765_010 Hb_000331_500--Hb_136765_010 Hb_000107_140 Hb_000107_140 Hb_000331_500--Hb_000107_140 Hb_003376_170 Hb_003376_170 Hb_000331_500--Hb_003376_170 Hb_004662_010 Hb_004662_010 Hb_000331_500--Hb_004662_010 Hb_042404_010 Hb_042404_010 Hb_000331_500--Hb_042404_010 Hb_000007_460 Hb_000007_460 Hb_012052_010--Hb_000007_460 Hb_000161_120 Hb_000161_120 Hb_012052_010--Hb_000161_120 Hb_033363_070 Hb_033363_070 Hb_012052_010--Hb_033363_070 Hb_003581_010 Hb_003581_010 Hb_012052_010--Hb_003581_010 Hb_005054_070 Hb_005054_070 Hb_012052_010--Hb_005054_070 Hb_000995_050 Hb_000995_050 Hb_120221_010--Hb_000995_050 Hb_011016_090 Hb_011016_090 Hb_120221_010--Hb_011016_090 Hb_002821_010 Hb_002821_010 Hb_120221_010--Hb_002821_010 Hb_002259_030 Hb_002259_030 Hb_120221_010--Hb_002259_030 Hb_000381_080 Hb_000381_080 Hb_120221_010--Hb_000381_080 Hb_001976_050 Hb_001976_050 Hb_120221_010--Hb_001976_050 Hb_001824_020--Hb_001976_050 Hb_012305_040 Hb_012305_040 Hb_001824_020--Hb_012305_040 Hb_153054_010 Hb_153054_010 Hb_001824_020--Hb_153054_010 Hb_073339_010 Hb_073339_010 Hb_001824_020--Hb_073339_010 Hb_006487_060 Hb_006487_060 Hb_001824_020--Hb_006487_060 Hb_010504_030 Hb_010504_030 Hb_001824_020--Hb_010504_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.285191 0.453472 0 0.381351 0.561859 1.92328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.679503 1.0696 0 0.123207 0

CAGE analysis