Hb_001824_020

Information

Type -
Description -
Location Contig1824: 25999-27107
Sequence    

Annotation

kegg
ID rcu:RCOM_1612160
description nucleotide binding protein, putative
nr
ID XP_002511720.1
description nucleotide binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RDD1
description Nucleotide binding protein, putative OS=Ricinus communis GN=RCOM_1612160 PE=4 SV=1
Gene Ontology
ID GO:0016779
description transducin beta-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001824_020 0.0 - - nucleotide binding protein, putative [Ricinus communis]
2 Hb_001976_050 0.172876199 - - PREDICTED: protein SKIP34 [Jatropha curcas]
3 Hb_012305_040 0.1773577482 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]
4 Hb_153054_010 0.1775705975 - - PREDICTED: metal tolerance protein 11-like [Populus euphratica]
5 Hb_073339_010 0.1860074396 - - hypothetical protein 30 [Hevea brasiliensis]
6 Hb_006487_060 0.1872373251 - - Defective in cullin neddylation protein, putative [Ricinus communis]
7 Hb_010504_030 0.1897235619 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
8 Hb_006487_050 0.1973567335 - - hypothetical protein PHAVU_005G049600g [Phaseolus vulgaris]
9 Hb_116596_010 0.199199845 - - PREDICTED: probable receptor-like protein kinase At5g47070-like isoform X1 [Citrus sinensis]
10 Hb_004117_180 0.2002517021 - - -
11 Hb_143947_010 0.2009993231 - - PREDICTED: deSI-like protein At4g17486 isoform X2 [Pyrus x bretschneideri]
12 Hb_000265_130 0.2013944453 - - -
13 Hb_058381_010 0.2036668977 - - hypothetical protein JCGZ_13280 [Jatropha curcas]
14 Hb_120221_010 0.2037746036 - - -
15 Hb_000608_180 0.2058029798 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Tarenaya hassleriana]
16 Hb_000001_040 0.2098816123 - - unnamed protein product [Coffea canephora]
17 Hb_000176_120 0.2108175773 - - seryl-tRNA synthetase, putative [Ricinus communis]
18 Hb_128998_010 0.2111119849 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
19 Hb_005367_010 0.21118041 - - -
20 Hb_000996_170 0.211384235 - - unknown [Glycine max]

Gene co-expression network

sample Hb_001824_020 Hb_001824_020 Hb_001976_050 Hb_001976_050 Hb_001824_020--Hb_001976_050 Hb_012305_040 Hb_012305_040 Hb_001824_020--Hb_012305_040 Hb_153054_010 Hb_153054_010 Hb_001824_020--Hb_153054_010 Hb_073339_010 Hb_073339_010 Hb_001824_020--Hb_073339_010 Hb_006487_060 Hb_006487_060 Hb_001824_020--Hb_006487_060 Hb_010504_030 Hb_010504_030 Hb_001824_020--Hb_010504_030 Hb_155375_010 Hb_155375_010 Hb_001976_050--Hb_155375_010 Hb_000032_540 Hb_000032_540 Hb_001976_050--Hb_000032_540 Hb_143947_010 Hb_143947_010 Hb_001976_050--Hb_143947_010 Hb_000510_090 Hb_000510_090 Hb_001976_050--Hb_000510_090 Hb_000705_220 Hb_000705_220 Hb_001976_050--Hb_000705_220 Hb_002259_030 Hb_002259_030 Hb_001976_050--Hb_002259_030 Hb_004662_010 Hb_004662_010 Hb_012305_040--Hb_004662_010 Hb_000176_120 Hb_000176_120 Hb_012305_040--Hb_000176_120 Hb_000107_140 Hb_000107_140 Hb_012305_040--Hb_000107_140 Hb_012305_040--Hb_073339_010 Hb_144898_010 Hb_144898_010 Hb_012305_040--Hb_144898_010 Hb_004241_040 Hb_004241_040 Hb_012305_040--Hb_004241_040 Hb_002217_310 Hb_002217_310 Hb_153054_010--Hb_002217_310 Hb_000849_070 Hb_000849_070 Hb_153054_010--Hb_000849_070 Hb_000183_040 Hb_000183_040 Hb_153054_010--Hb_000183_040 Hb_005539_290 Hb_005539_290 Hb_153054_010--Hb_005539_290 Hb_050455_010 Hb_050455_010 Hb_153054_010--Hb_050455_010 Hb_000069_160 Hb_000069_160 Hb_153054_010--Hb_000069_160 Hb_000035_130 Hb_000035_130 Hb_073339_010--Hb_000035_130 Hb_005965_010 Hb_005965_010 Hb_073339_010--Hb_005965_010 Hb_006455_110 Hb_006455_110 Hb_073339_010--Hb_006455_110 Hb_073339_010--Hb_001976_050 Hb_006723_020 Hb_006723_020 Hb_073339_010--Hb_006723_020 Hb_012807_080 Hb_012807_080 Hb_073339_010--Hb_012807_080 Hb_152554_010 Hb_152554_010 Hb_006487_060--Hb_152554_010 Hb_007763_060 Hb_007763_060 Hb_006487_060--Hb_007763_060 Hb_006487_060--Hb_000176_120 Hb_006663_090 Hb_006663_090 Hb_006487_060--Hb_006663_090 Hb_006487_050 Hb_006487_050 Hb_006487_060--Hb_006487_050 Hb_000825_030 Hb_000825_030 Hb_006487_060--Hb_000825_030 Hb_128998_010 Hb_128998_010 Hb_010504_030--Hb_128998_010 Hb_010504_030--Hb_000176_120 Hb_000327_290 Hb_000327_290 Hb_010504_030--Hb_000327_290 Hb_000001_040 Hb_000001_040 Hb_010504_030--Hb_000001_040 Hb_000265_130 Hb_000265_130 Hb_010504_030--Hb_000265_130 Hb_000007_460 Hb_000007_460 Hb_010504_030--Hb_000007_460
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.238502 0.230511 0 0.463559 0.313817 1.07678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.470509 0.369581 0.20444 0.0517227 0

CAGE analysis