Hb_004712_180

Information

Type -
Description -
Location Contig4712: 109821-112124
Sequence    

Annotation

kegg
ID rcu:RCOM_0522450
description hypothetical protein
nr
ID XP_002522770.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P38838
description DNA-dependent metalloprotease WSS1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=WSS1 PE=1 SV=1
trembl
ID B9S9V1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0522450 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44278: 109569-111895
cDNA
(Sanger)
(ID:Location)		 006_M21.ab1: 110771-111895

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004712_180 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_073367_010 0.1108152566 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
3 Hb_000065_080 0.1350529103 - - PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Nelumbo nucifera]
4 Hb_011174_010 0.1454851167 - - hypothetical protein JCGZ_10122 [Jatropha curcas]
5 Hb_029888_020 0.1459572081 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
6 Hb_086703_010 0.1462291079 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
7 Hb_000622_100 0.1463704169 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]
8 Hb_000621_060 0.1509611048 - - PREDICTED: zinc transporter 5 [Jatropha curcas]
9 Hb_007632_090 0.1511758883 - - PREDICTED: nicotinamide/nicotinic acid mononucleotide adenylyltransferase isoform X1 [Jatropha curcas]
10 Hb_003043_070 0.1523402085 - - -
11 Hb_002272_260 0.1525369464 - - -
12 Hb_000723_090 0.1551941402 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003746_060 0.15845941 - - PREDICTED: DTW domain-containing protein 2 [Jatropha curcas]
14 Hb_000465_040 0.1588802304 - - PREDICTED: uncharacterized protein LOC103433005 isoform X1 [Malus domestica]
15 Hb_002863_010 0.1615020026 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
16 Hb_004117_290 0.1639852505 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000617_320 0.1650574513 - - 40S ribosomal protein S21B [Hevea brasiliensis]
18 Hb_000107_140 0.1656883918 - - -
19 Hb_002301_280 0.1675140295 transcription factor TF Family: SBP hypothetical protein JCGZ_21462 [Jatropha curcas]
20 Hb_014834_140 0.1686188202 - - Uncharacterized protein TCM_015942 [Theobroma cacao]

Gene co-expression network

sample Hb_004712_180 Hb_004712_180 Hb_073367_010 Hb_073367_010 Hb_004712_180--Hb_073367_010 Hb_000065_080 Hb_000065_080 Hb_004712_180--Hb_000065_080 Hb_011174_010 Hb_011174_010 Hb_004712_180--Hb_011174_010 Hb_029888_020 Hb_029888_020 Hb_004712_180--Hb_029888_020 Hb_086703_010 Hb_086703_010 Hb_004712_180--Hb_086703_010 Hb_000622_100 Hb_000622_100 Hb_004712_180--Hb_000622_100 Hb_073367_010--Hb_000622_100 Hb_073367_010--Hb_000065_080 Hb_073367_010--Hb_011174_010 Hb_003106_130 Hb_003106_130 Hb_073367_010--Hb_003106_130 Hb_002235_150 Hb_002235_150 Hb_073367_010--Hb_002235_150 Hb_003874_020 Hb_003874_020 Hb_000065_080--Hb_003874_020 Hb_002107_160 Hb_002107_160 Hb_000065_080--Hb_002107_160 Hb_001009_040 Hb_001009_040 Hb_000065_080--Hb_001009_040 Hb_000621_060 Hb_000621_060 Hb_000065_080--Hb_000621_060 Hb_025236_040 Hb_025236_040 Hb_000065_080--Hb_025236_040 Hb_001278_110 Hb_001278_110 Hb_000065_080--Hb_001278_110 Hb_002272_260 Hb_002272_260 Hb_011174_010--Hb_002272_260 Hb_011174_010--Hb_000622_100 Hb_004117_180 Hb_004117_180 Hb_011174_010--Hb_004117_180 Hb_011016_090 Hb_011016_090 Hb_011174_010--Hb_011016_090 Hb_000771_100 Hb_000771_100 Hb_011174_010--Hb_000771_100 Hb_029888_020--Hb_086703_010 Hb_004807_060 Hb_004807_060 Hb_029888_020--Hb_004807_060 Hb_003746_060 Hb_003746_060 Hb_029888_020--Hb_003746_060 Hb_000193_350 Hb_000193_350 Hb_029888_020--Hb_000193_350 Hb_017711_010 Hb_017711_010 Hb_029888_020--Hb_017711_010 Hb_004502_080 Hb_004502_080 Hb_029888_020--Hb_004502_080 Hb_086703_010--Hb_000771_100 Hb_003043_070 Hb_003043_070 Hb_086703_010--Hb_003043_070 Hb_000155_180 Hb_000155_180 Hb_086703_010--Hb_000155_180 Hb_001269_320 Hb_001269_320 Hb_086703_010--Hb_001269_320 Hb_003011_040 Hb_003011_040 Hb_086703_010--Hb_003011_040 Hb_003405_060 Hb_003405_060 Hb_086703_010--Hb_003405_060 Hb_007632_250 Hb_007632_250 Hb_000622_100--Hb_007632_250 Hb_000189_530 Hb_000189_530 Hb_000622_100--Hb_000189_530 Hb_000617_320 Hb_000617_320 Hb_000622_100--Hb_000617_320 Hb_119583_010 Hb_119583_010 Hb_000622_100--Hb_119583_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.42322 2.94531 2.26568 5.63625 11.462 18.5361
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9403 12.925 1.52456 1.7113 0.849153

CAGE analysis