Hb_002197_030

Information

Type -
Description -
Location Contig2197: 50960-53231
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01300g
description hypothetical protein
nr
ID XP_012066209.1
description PREDICTED: MATH domain-containing protein At5g43560-like isoform X2 [Jatropha curcas]
swissprot
ID Q9FPT1
description Ubiquitin carboxyl-terminal hydrolase 12 OS=Arabidopsis thaliana GN=UBP12 PE=1 SV=2
trembl
ID A0A067LF79
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22127 PE=4 SV=1
Gene Ontology
ID GO:0005515
description probable inactive serine threonine-protein kinase fnkc

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22598: 51061-52939 , PASA_asmbl_22599: 51030-52986
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002197_030 0.0 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X2 [Jatropha curcas]
2 Hb_000453_260 0.1000880342 - - PREDICTED: armadillo repeat-containing protein 7 isoform X1 [Vitis vinifera]
3 Hb_006252_010 0.1100162868 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Jatropha curcas]
4 Hb_009543_030 0.1218782967 - - prefoldin subunit 1 [Jatropha curcas]
5 Hb_002023_020 0.124067615 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
6 Hb_000608_180 0.1260033422 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Tarenaya hassleriana]
7 Hb_000364_150 0.1267487973 - - -
8 Hb_015057_010 0.1270222598 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
9 Hb_137403_010 0.1302886007 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
10 Hb_002272_260 0.1314155373 - - -
11 Hb_000101_090 0.1319111862 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Camelina sativa]
12 Hb_000062_420 0.1345159701 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001054_130 0.1351309181 - - Protein SSU72, putative [Ricinus communis]
14 Hb_039253_010 0.1357091204 - - PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X2 [Jatropha curcas]
15 Hb_002259_150 0.1360045634 - - BnaC04g40780D [Brassica napus]
16 Hb_000705_260 0.1430419547 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000380_010 0.1439095718 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
18 Hb_009558_020 0.1440962807 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
19 Hb_004453_150 0.1455554768 - - BnaC02g13240D [Brassica napus]
20 Hb_003656_140 0.1470250903 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_002197_030 Hb_002197_030 Hb_000453_260 Hb_000453_260 Hb_002197_030--Hb_000453_260 Hb_006252_010 Hb_006252_010 Hb_002197_030--Hb_006252_010 Hb_009543_030 Hb_009543_030 Hb_002197_030--Hb_009543_030 Hb_002023_020 Hb_002023_020 Hb_002197_030--Hb_002023_020 Hb_000608_180 Hb_000608_180 Hb_002197_030--Hb_000608_180 Hb_000364_150 Hb_000364_150 Hb_002197_030--Hb_000364_150 Hb_000995_050 Hb_000995_050 Hb_000453_260--Hb_000995_050 Hb_015057_010 Hb_015057_010 Hb_000453_260--Hb_015057_010 Hb_123202_010 Hb_123202_010 Hb_000453_260--Hb_123202_010 Hb_004242_100 Hb_004242_100 Hb_000453_260--Hb_004242_100 Hb_000329_770 Hb_000329_770 Hb_000453_260--Hb_000329_770 Hb_006252_010--Hb_002023_020 Hb_137403_010 Hb_137403_010 Hb_006252_010--Hb_137403_010 Hb_003656_140 Hb_003656_140 Hb_006252_010--Hb_003656_140 Hb_006252_010--Hb_000364_150 Hb_039253_010 Hb_039253_010 Hb_006252_010--Hb_039253_010 Hb_000103_140 Hb_000103_140 Hb_009543_030--Hb_000103_140 Hb_000175_070 Hb_000175_070 Hb_009543_030--Hb_000175_070 Hb_000510_090 Hb_000510_090 Hb_009543_030--Hb_000510_090 Hb_007193_100 Hb_007193_100 Hb_009543_030--Hb_007193_100 Hb_004453_150 Hb_004453_150 Hb_009543_030--Hb_004453_150 Hb_000684_230 Hb_000684_230 Hb_009543_030--Hb_000684_230 Hb_002023_020--Hb_039253_010 Hb_002023_020--Hb_003656_140 Hb_002023_020--Hb_137403_010 Hb_002023_020--Hb_000364_150 Hb_000307_200 Hb_000307_200 Hb_002023_020--Hb_000307_200 Hb_071736_010 Hb_071736_010 Hb_002023_020--Hb_071736_010 Hb_000608_180--Hb_006252_010 Hb_006487_060 Hb_006487_060 Hb_000608_180--Hb_006487_060 Hb_000608_180--Hb_137403_010 Hb_005965_010 Hb_005965_010 Hb_000608_180--Hb_005965_010 Hb_000608_180--Hb_002023_020 Hb_000914_070 Hb_000914_070 Hb_000364_150--Hb_000914_070 Hb_000364_150--Hb_137403_010 Hb_000364_150--Hb_039253_010 Hb_004055_140 Hb_004055_140 Hb_000364_150--Hb_004055_140 Hb_009117_030 Hb_009117_030 Hb_000364_150--Hb_009117_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.3386 11.2507 7.89572 27.2608 35.6472 175.197
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
96.2957 57.8538 35.3458 55.3838 12.3507

CAGE analysis