Hb_006252_010

Information

Type -
Description -
Location Contig6252: 7351-15480
Sequence    

Annotation

kegg
ID rcu:RCOM_1028280
description hypothetical protein
nr
ID XP_012077556.1
description PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Jatropha curcas]
swissprot
ID Q8K2U2
description Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Mus musculus GN=Alkbh6 PE=2 SV=3
trembl
ID A0A067LB69
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17259 PE=4 SV=1
Gene Ontology
ID GO:0016491
description alpha-ketoglutarate-dependent dioxygenase alkb homolog 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51645: 6554-7386 , PASA_asmbl_51646: 7394-15016
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006252_010 0.0 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Jatropha curcas]
2 Hb_002023_020 0.0957402411 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
3 Hb_137403_010 0.0970960922 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
4 Hb_002197_030 0.1100162868 - - PREDICTED: MATH domain-containing protein At5g43560-like isoform X2 [Jatropha curcas]
5 Hb_003656_140 0.1161876489 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
6 Hb_000364_150 0.1187635196 - - -
7 Hb_039253_010 0.1212895079 - - PREDICTED: zinc finger CCCH domain-containing protein 31 isoform X2 [Jatropha curcas]
8 Hb_000183_040 0.1222441552 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
9 Hb_150360_010 0.1229971845 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
10 Hb_000608_180 0.1250085367 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Tarenaya hassleriana]
11 Hb_000042_230 0.1312282524 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD5 [Jatropha curcas]
12 Hb_000101_090 0.1373927523 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Camelina sativa]
13 Hb_153054_010 0.1375321106 - - PREDICTED: metal tolerance protein 11-like [Populus euphratica]
14 Hb_006487_050 0.1377100343 - - hypothetical protein PHAVU_005G049600g [Phaseolus vulgaris]
15 Hb_009543_030 0.1377744576 - - prefoldin subunit 1 [Jatropha curcas]
16 Hb_000671_100 0.1383261716 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
17 Hb_000307_200 0.1400798785 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
18 Hb_000176_120 0.1404333826 - - seryl-tRNA synthetase, putative [Ricinus communis]
19 Hb_006487_060 0.1424023978 - - Defective in cullin neddylation protein, putative [Ricinus communis]
20 Hb_012286_050 0.1426577183 - - PREDICTED: syntaxin-61 [Jatropha curcas]

Gene co-expression network

sample Hb_006252_010 Hb_006252_010 Hb_002023_020 Hb_002023_020 Hb_006252_010--Hb_002023_020 Hb_137403_010 Hb_137403_010 Hb_006252_010--Hb_137403_010 Hb_002197_030 Hb_002197_030 Hb_006252_010--Hb_002197_030 Hb_003656_140 Hb_003656_140 Hb_006252_010--Hb_003656_140 Hb_000364_150 Hb_000364_150 Hb_006252_010--Hb_000364_150 Hb_039253_010 Hb_039253_010 Hb_006252_010--Hb_039253_010 Hb_002023_020--Hb_039253_010 Hb_002023_020--Hb_003656_140 Hb_002023_020--Hb_137403_010 Hb_002023_020--Hb_000364_150 Hb_000307_200 Hb_000307_200 Hb_002023_020--Hb_000307_200 Hb_071736_010 Hb_071736_010 Hb_002023_020--Hb_071736_010 Hb_137403_010--Hb_003656_140 Hb_002982_040 Hb_002982_040 Hb_137403_010--Hb_002982_040 Hb_137403_010--Hb_000364_150 Hb_005862_010 Hb_005862_010 Hb_137403_010--Hb_005862_010 Hb_150360_010 Hb_150360_010 Hb_137403_010--Hb_150360_010 Hb_000453_260 Hb_000453_260 Hb_002197_030--Hb_000453_260 Hb_009543_030 Hb_009543_030 Hb_002197_030--Hb_009543_030 Hb_002197_030--Hb_002023_020 Hb_000608_180 Hb_000608_180 Hb_002197_030--Hb_000608_180 Hb_002197_030--Hb_000364_150 Hb_041392_010 Hb_041392_010 Hb_003656_140--Hb_041392_010 Hb_187739_020 Hb_187739_020 Hb_003656_140--Hb_187739_020 Hb_003656_140--Hb_150360_010 Hb_000866_030 Hb_000866_030 Hb_003656_140--Hb_000866_030 Hb_000914_070 Hb_000914_070 Hb_000364_150--Hb_000914_070 Hb_000364_150--Hb_039253_010 Hb_004055_140 Hb_004055_140 Hb_000364_150--Hb_004055_140 Hb_009117_030 Hb_009117_030 Hb_000364_150--Hb_009117_030 Hb_002805_070 Hb_002805_070 Hb_039253_010--Hb_002805_070 Hb_039253_010--Hb_003656_140 Hb_001102_150 Hb_001102_150 Hb_039253_010--Hb_001102_150 Hb_012286_050 Hb_012286_050 Hb_039253_010--Hb_012286_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.92248 2.64834 2.41626 10.0936 11.4361 40.1409
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.9758 7.53804 8.75982 8.44593 2.75078

CAGE analysis