Hb_003695_010

Information

Type -
Description -
Location Contig3695: 53019-54597
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa018573mg
description hypothetical protein
nr
ID XP_009611416.1
description PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID M1DL63
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400040359 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003695_010 0.0 - - PREDICTED: uncharacterized protein LOC104104926 [Nicotiana tomentosiformis]
2 Hb_000981_040 0.240051516 - - -
3 Hb_116632_010 0.2567242867 - - unnamed protein product [Vitis vinifera]
4 Hb_017462_010 0.2586448187 - - -
5 Hb_000204_020 0.2615483952 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
6 Hb_013818_050 0.2615924144 - - PREDICTED: uncharacterized protein LOC105629143 isoform X2 [Jatropha curcas]
7 Hb_000289_080 0.2665071046 - - conserved hypothetical protein [Ricinus communis]
8 Hb_006065_040 0.2680325426 - - -
9 Hb_015026_150 0.2708294204 - - Nuclease PA3, putative [Ricinus communis]
10 Hb_007484_040 0.2716588063 - - -
11 Hb_003029_100 0.2726177659 - - -
12 Hb_001584_320 0.2750944024 - - PREDICTED: zinc finger CCCH domain-containing protein 3 [Jatropha curcas]
13 Hb_010565_040 0.2757128883 - - hypothetical protein POPTR_0015s05280g, partial [Populus trichocarpa]
14 Hb_001916_080 0.2775759895 - - PREDICTED: uncharacterized protein LOC105641552 [Jatropha curcas]
15 Hb_007534_020 0.2794158718 - - -
16 Hb_013691_030 0.2817243983 - - hypothetical protein CISIN_1g020131mg [Citrus sinensis]
17 Hb_012094_030 0.2830168966 - - PREDICTED: uncharacterized protein LOC103699727 [Phoenix dactylifera]
18 Hb_075745_010 0.2841293616 - - hypothetical protein EUGRSUZ_D00579 [Eucalyptus grandis]
19 Hb_032258_020 0.2853768012 - - PREDICTED: amidase 1-like isoform X2 [Malus domestica]
20 Hb_000668_020 0.2860905751 - - -

Gene co-expression network

sample Hb_003695_010 Hb_003695_010 Hb_000981_040 Hb_000981_040 Hb_003695_010--Hb_000981_040 Hb_116632_010 Hb_116632_010 Hb_003695_010--Hb_116632_010 Hb_017462_010 Hb_017462_010 Hb_003695_010--Hb_017462_010 Hb_000204_020 Hb_000204_020 Hb_003695_010--Hb_000204_020 Hb_013818_050 Hb_013818_050 Hb_003695_010--Hb_013818_050 Hb_000289_080 Hb_000289_080 Hb_003695_010--Hb_000289_080 Hb_095192_010 Hb_095192_010 Hb_000981_040--Hb_095192_010 Hb_000085_130 Hb_000085_130 Hb_000981_040--Hb_000085_130 Hb_000317_140 Hb_000317_140 Hb_000981_040--Hb_000317_140 Hb_007763_050 Hb_007763_050 Hb_000981_040--Hb_007763_050 Hb_002168_010 Hb_002168_010 Hb_000981_040--Hb_002168_010 Hb_007188_020 Hb_007188_020 Hb_116632_010--Hb_007188_020 Hb_068014_010 Hb_068014_010 Hb_116632_010--Hb_068014_010 Hb_003581_010 Hb_003581_010 Hb_116632_010--Hb_003581_010 Hb_005085_030 Hb_005085_030 Hb_116632_010--Hb_005085_030 Hb_000265_130 Hb_000265_130 Hb_116632_010--Hb_000265_130 Hb_116632_010--Hb_017462_010 Hb_015026_150 Hb_015026_150 Hb_017462_010--Hb_015026_150 Hb_002784_070 Hb_002784_070 Hb_017462_010--Hb_002784_070 Hb_017462_010--Hb_007188_020 Hb_007484_040 Hb_007484_040 Hb_017462_010--Hb_007484_040 Hb_014834_040 Hb_014834_040 Hb_017462_010--Hb_014834_040 Hb_000204_020--Hb_000289_080 Hb_003029_100 Hb_003029_100 Hb_000204_020--Hb_003029_100 Hb_006995_010 Hb_006995_010 Hb_000204_020--Hb_006995_010 Hb_005933_010 Hb_005933_010 Hb_000204_020--Hb_005933_010 Hb_169170_010 Hb_169170_010 Hb_000204_020--Hb_169170_010 Hb_008277_030 Hb_008277_030 Hb_000204_020--Hb_008277_030 Hb_012052_010 Hb_012052_010 Hb_013818_050--Hb_012052_010 Hb_001427_060 Hb_001427_060 Hb_013818_050--Hb_001427_060 Hb_013818_050--Hb_017462_010 Hb_013818_050--Hb_007484_040 Hb_003964_090 Hb_003964_090 Hb_013818_050--Hb_003964_090 Hb_013818_050--Hb_014834_040 Hb_000289_080--Hb_006995_010 Hb_000289_080--Hb_003029_100 Hb_000086_190 Hb_000086_190 Hb_000289_080--Hb_000086_190 Hb_000668_020 Hb_000668_020 Hb_000289_080--Hb_000668_020 Hb_003656_150 Hb_003656_150 Hb_000289_080--Hb_003656_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0229025 0.101128 0 0.276077
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0660619 0.103891 0 0.0630419 0

CAGE analysis