Hb_000204_020

Information

Type transcription factor
Description TF Family: GNAT
Location Contig204: 25447-25677
Sequence    

Annotation

kegg
ID rcu:RCOM_1465100
description N-acetyltransferase, putative
nr
ID XP_012080496.1
description PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
swissprot
ID Q5KQI6
description Probable acetyltransferase NSI OS=Oryza sativa subsp. japonica GN=NSI PE=2 SV=1
trembl
ID A0A067KGN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11806 PE=4 SV=1
Gene Ontology
ID GO:0009507
description uncharacterized n-acetyltransferase ycf52

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000204_020 0.0 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
2 Hb_000289_080 0.1506243698 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003029_100 0.1609149751 - - -
4 Hb_006995_010 0.1610158642 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
5 Hb_005933_010 0.1718559915 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
6 Hb_169170_010 0.1760030921 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
7 Hb_008277_030 0.1819556337 - - hypothetical protein CICLE_v10024419mg, partial [Citrus clementina]
8 Hb_124141_010 0.1829752206 - - plant origin recognition complex subunit, putative [Ricinus communis]
9 Hb_000261_360 0.1843329376 - - unknown [Lotus japonicus]
10 Hb_003581_010 0.1864935221 - - hypothetical protein VITISV_004687 [Vitis vinifera]
11 Hb_034579_010 0.186500904 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
12 Hb_000248_030 0.1867299253 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
13 Hb_168737_010 0.1880267232 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_116632_010 0.190426162 - - unnamed protein product [Vitis vinifera]
15 Hb_032531_060 0.192501782 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
16 Hb_122567_020 0.1947297701 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
17 Hb_000265_130 0.1956847534 - - -
18 Hb_000316_090 0.1980477769 - - -
19 Hb_005731_140 0.1994609332 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
20 Hb_000086_190 0.1998732636 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 3-like protein [Cucumis sativus]

Gene co-expression network

sample Hb_000204_020 Hb_000204_020 Hb_000289_080 Hb_000289_080 Hb_000204_020--Hb_000289_080 Hb_003029_100 Hb_003029_100 Hb_000204_020--Hb_003029_100 Hb_006995_010 Hb_006995_010 Hb_000204_020--Hb_006995_010 Hb_005933_010 Hb_005933_010 Hb_000204_020--Hb_005933_010 Hb_169170_010 Hb_169170_010 Hb_000204_020--Hb_169170_010 Hb_008277_030 Hb_008277_030 Hb_000204_020--Hb_008277_030 Hb_000289_080--Hb_006995_010 Hb_000289_080--Hb_003029_100 Hb_000086_190 Hb_000086_190 Hb_000289_080--Hb_000086_190 Hb_000668_020 Hb_000668_020 Hb_000289_080--Hb_000668_020 Hb_003656_150 Hb_003656_150 Hb_000289_080--Hb_003656_150 Hb_003029_100--Hb_006995_010 Hb_003029_100--Hb_003656_150 Hb_003029_100--Hb_000086_190 Hb_124141_010 Hb_124141_010 Hb_003029_100--Hb_124141_010 Hb_006198_090 Hb_006198_090 Hb_003029_100--Hb_006198_090 Hb_006995_010--Hb_003656_150 Hb_012675_080 Hb_012675_080 Hb_006995_010--Hb_012675_080 Hb_006995_010--Hb_000086_190 Hb_006995_010--Hb_006198_090 Hb_122567_020 Hb_122567_020 Hb_005933_010--Hb_122567_020 Hb_000248_030 Hb_000248_030 Hb_005933_010--Hb_000248_030 Hb_001235_060 Hb_001235_060 Hb_005933_010--Hb_001235_060 Hb_000248_010 Hb_000248_010 Hb_005933_010--Hb_000248_010 Hb_001691_160 Hb_001691_160 Hb_005933_010--Hb_001691_160 Hb_059952_010 Hb_059952_010 Hb_005933_010--Hb_059952_010 Hb_177103_010 Hb_177103_010 Hb_169170_010--Hb_177103_010 Hb_068014_010 Hb_068014_010 Hb_169170_010--Hb_068014_010 Hb_169170_010--Hb_006198_090 Hb_005318_020 Hb_005318_020 Hb_169170_010--Hb_005318_020 Hb_007447_020 Hb_007447_020 Hb_169170_010--Hb_007447_020 Hb_007188_030 Hb_007188_030 Hb_169170_010--Hb_007188_030 Hb_000265_130 Hb_000265_130 Hb_008277_030--Hb_000265_130 Hb_000261_360 Hb_000261_360 Hb_008277_030--Hb_000261_360 Hb_073559_010 Hb_073559_010 Hb_008277_030--Hb_073559_010 Hb_032531_060 Hb_032531_060 Hb_008277_030--Hb_032531_060 Hb_008277_030--Hb_000248_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.03214 0 1.71193 15.2068 2.34729 66.2302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.17033 10.4295 2.34955 3.68052 0

CAGE analysis