Hb_001754_140

Information

Type -
Description -
Location Contig1754: 107436-110046
Sequence    

Annotation

kegg
ID pop:POPTR_0010s02540g
description POPTRDRAFT_768814; hypothetical protein
nr
ID XP_012083924.1
description PREDICTED: uncharacterized protein LOC105643419 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9HSB7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s02540g PE=4 SV=2
Gene Ontology
ID GO:0046872
description uveal autoantigen with coiled-coil domains and ankyrin repeats isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16803: 107310-107520
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001754_140 0.0 - - PREDICTED: uncharacterized protein LOC105643419 [Jatropha curcas]
2 Hb_007885_010 0.1204932684 - - 60S ribosomal protein L24-1 isoform 1 [Theobroma cacao]
3 Hb_003058_080 0.1717034765 - - Chaperonin 10 isoform 1 [Theobroma cacao]
4 Hb_000212_210 0.172916739 - - unnamed protein product [Coffea canephora]
5 Hb_001512_050 0.1779477789 - - copine, putative [Ricinus communis]
6 Hb_006028_020 0.1780531372 - - PREDICTED: 60S ribosomal protein L38-like [Cicer arietinum]
7 Hb_000809_060 0.1810278051 transcription factor TF Family: LOB LOB domain-containing 36 -like protein [Gossypium arboreum]
8 Hb_027472_160 0.1830507701 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
9 Hb_003057_020 0.1851614874 - - 40S ribosomal protein S23, putative [Ricinus communis]
10 Hb_005144_070 0.1860742109 - - conserved hypothetical protein [Ricinus communis]
11 Hb_116349_110 0.187700222 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
12 Hb_000384_130 0.1951034062 - - uridylate kinase plant, putative [Ricinus communis]
13 Hb_000853_240 0.1970330418 - - -
14 Hb_004755_030 0.1975751881 - - EG964 [Manihot glaziovii]
15 Hb_178227_010 0.1995306376 - - Mitochondrial import inner membrane translocase subunit Tim13, putative [Ricinus communis]
16 Hb_000159_070 0.2000005639 - - JHL03K20.4 [Jatropha curcas]
17 Hb_009880_010 0.200867281 - - PREDICTED: cytochrome c [Jatropha curcas]
18 Hb_003198_010 0.2015272974 - - Valine--tRNA ligase [Gossypium arboreum]
19 Hb_000272_050 0.2028575544 - - hypothetical protein JCGZ_03991 [Jatropha curcas]
20 Hb_000696_220 0.2036889804 - - PREDICTED: uncharacterized protein LOC105647113 [Jatropha curcas]

Gene co-expression network

sample Hb_001754_140 Hb_001754_140 Hb_007885_010 Hb_007885_010 Hb_001754_140--Hb_007885_010 Hb_003058_080 Hb_003058_080 Hb_001754_140--Hb_003058_080 Hb_000212_210 Hb_000212_210 Hb_001754_140--Hb_000212_210 Hb_001512_050 Hb_001512_050 Hb_001754_140--Hb_001512_050 Hb_006028_020 Hb_006028_020 Hb_001754_140--Hb_006028_020 Hb_000809_060 Hb_000809_060 Hb_001754_140--Hb_000809_060 Hb_007885_010--Hb_000809_060 Hb_000159_070 Hb_000159_070 Hb_007885_010--Hb_000159_070 Hb_007885_010--Hb_001512_050 Hb_007885_010--Hb_003058_080 Hb_007885_010--Hb_000212_210 Hb_002783_270 Hb_002783_270 Hb_003058_080--Hb_002783_270 Hb_007044_130 Hb_007044_130 Hb_003058_080--Hb_007044_130 Hb_004052_020 Hb_004052_020 Hb_003058_080--Hb_004052_020 Hb_012753_230 Hb_012753_230 Hb_003058_080--Hb_012753_230 Hb_000046_560 Hb_000046_560 Hb_003058_080--Hb_000046_560 Hb_047823_010 Hb_047823_010 Hb_003058_080--Hb_047823_010 Hb_002811_090 Hb_002811_090 Hb_000212_210--Hb_002811_090 Hb_003057_020 Hb_003057_020 Hb_000212_210--Hb_003057_020 Hb_001789_050 Hb_001789_050 Hb_000212_210--Hb_001789_050 Hb_007120_090 Hb_007120_090 Hb_000212_210--Hb_007120_090 Hb_000042_260 Hb_000042_260 Hb_000212_210--Hb_000042_260 Hb_000272_050 Hb_000272_050 Hb_000212_210--Hb_000272_050 Hb_007245_080 Hb_007245_080 Hb_001512_050--Hb_007245_080 Hb_116349_110 Hb_116349_110 Hb_001512_050--Hb_116349_110 Hb_000062_650 Hb_000062_650 Hb_001512_050--Hb_000062_650 Hb_000576_060 Hb_000576_060 Hb_001512_050--Hb_000576_060 Hb_002588_010 Hb_002588_010 Hb_001512_050--Hb_002588_010 Hb_004223_040 Hb_004223_040 Hb_001512_050--Hb_004223_040 Hb_006028_020--Hb_002811_090 Hb_027472_160 Hb_027472_160 Hb_006028_020--Hb_027472_160 Hb_132840_140 Hb_132840_140 Hb_006028_020--Hb_132840_140 Hb_001431_080 Hb_001431_080 Hb_006028_020--Hb_001431_080 Hb_000139_430 Hb_000139_430 Hb_006028_020--Hb_000139_430 Hb_002686_180 Hb_002686_180 Hb_006028_020--Hb_002686_180 Hb_002081_030 Hb_002081_030 Hb_000809_060--Hb_002081_030 Hb_009778_040 Hb_009778_040 Hb_000809_060--Hb_009778_040 Hb_004755_030 Hb_004755_030 Hb_000809_060--Hb_004755_030 Hb_005144_070 Hb_005144_070 Hb_000809_060--Hb_005144_070 Hb_076693_040 Hb_076693_040 Hb_000809_060--Hb_076693_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8858 3.01928 22.4948 12.6226 5.42593 4.55226
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.6156 83.3817 8.95806 2.40663 1.01629

CAGE analysis