Hb_010661_040

Information

Type -
Description -
Location Contig10661: 48538-48888
Sequence    

Annotation

kegg
ID pop:POPTR_0021s00470g
description hypothetical protein
nr
ID XP_006389596.1
description hypothetical protein POPTR_0021s00470g [Populus trichocarpa]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID U7DZR3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0021s00470g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010661_040 0.0 - - hypothetical protein POPTR_0021s00470g [Populus trichocarpa]
2 Hb_167452_010 0.2920364302 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
3 Hb_000853_040 0.3258923885 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004088_060 0.3461071372 - - hypothetical protein POPTR_0012s01875g [Populus trichocarpa]
5 Hb_005524_010 0.3559814118 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
6 Hb_000608_210 0.3607138878 - - PREDICTED: leucine-rich repeat receptor-like protein FASCIATED EAR2 [Gossypium raimondii]
7 Hb_003405_040 0.3613305594 - - PREDICTED: uncharacterized protein LOC105121978 [Populus euphratica]
8 Hb_002401_010 0.3711086151 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
9 Hb_001638_010 0.3717789793 - - -
10 Hb_021346_040 0.3795897565 - - hypothetical protein JCGZ_26751 [Jatropha curcas]
11 Hb_156850_080 0.3911813404 - - PREDICTED: uncharacterized protein LOC105635247 [Jatropha curcas]
12 Hb_002211_040 0.3922153635 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
13 Hb_187136_010 0.3929707698 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
14 Hb_098988_010 0.3937688078 - - hypothetical protein JCGZ_18539 [Jatropha curcas]
15 Hb_001268_100 0.3965737911 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein KNUCKLES [Jatropha curcas]
16 Hb_016859_010 0.3976981281 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_136850_040 0.4017787664 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_005048_060 0.4026011563 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004712_170 0.4042557658 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 [Jatropha curcas]
20 Hb_000375_230 0.4053904422 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase

Gene co-expression network

sample Hb_010661_040 Hb_010661_040 Hb_167452_010 Hb_167452_010 Hb_010661_040--Hb_167452_010 Hb_000853_040 Hb_000853_040 Hb_010661_040--Hb_000853_040 Hb_004088_060 Hb_004088_060 Hb_010661_040--Hb_004088_060 Hb_005524_010 Hb_005524_010 Hb_010661_040--Hb_005524_010 Hb_000608_210 Hb_000608_210 Hb_010661_040--Hb_000608_210 Hb_003405_040 Hb_003405_040 Hb_010661_040--Hb_003405_040 Hb_167452_010--Hb_000853_040 Hb_021346_040 Hb_021346_040 Hb_167452_010--Hb_021346_040 Hb_000392_460 Hb_000392_460 Hb_167452_010--Hb_000392_460 Hb_000260_150 Hb_000260_150 Hb_167452_010--Hb_000260_150 Hb_016859_010 Hb_016859_010 Hb_167452_010--Hb_016859_010 Hb_000853_040--Hb_021346_040 Hb_000853_040--Hb_000392_460 Hb_083822_010 Hb_083822_010 Hb_000853_040--Hb_083822_010 Hb_003938_030 Hb_003938_030 Hb_000853_040--Hb_003938_030 Hb_001104_050 Hb_001104_050 Hb_000853_040--Hb_001104_050 Hb_001414_130 Hb_001414_130 Hb_004088_060--Hb_001414_130 Hb_001638_080 Hb_001638_080 Hb_004088_060--Hb_001638_080 Hb_010874_030 Hb_010874_030 Hb_004088_060--Hb_010874_030 Hb_005048_060 Hb_005048_060 Hb_004088_060--Hb_005048_060 Hb_001214_150 Hb_001214_150 Hb_004088_060--Hb_001214_150 Hb_015909_010 Hb_015909_010 Hb_004088_060--Hb_015909_010 Hb_001798_040 Hb_001798_040 Hb_005524_010--Hb_001798_040 Hb_000853_380 Hb_000853_380 Hb_005524_010--Hb_000853_380 Hb_000457_040 Hb_000457_040 Hb_005524_010--Hb_000457_040 Hb_000487_390 Hb_000487_390 Hb_005524_010--Hb_000487_390 Hb_001263_020 Hb_001263_020 Hb_005524_010--Hb_001263_020 Hb_012656_010 Hb_012656_010 Hb_005524_010--Hb_012656_010 Hb_002211_040 Hb_002211_040 Hb_000608_210--Hb_002211_040 Hb_011689_140 Hb_011689_140 Hb_000608_210--Hb_011689_140 Hb_002401_010 Hb_002401_010 Hb_000608_210--Hb_002401_010 Hb_003100_010 Hb_003100_010 Hb_000608_210--Hb_003100_010 Hb_008195_040 Hb_008195_040 Hb_000608_210--Hb_008195_040 Hb_004041_070 Hb_004041_070 Hb_000608_210--Hb_004041_070 Hb_000832_330 Hb_000832_330 Hb_003405_040--Hb_000832_330 Hb_070745_010 Hb_070745_010 Hb_003405_040--Hb_070745_010 Hb_018118_040 Hb_018118_040 Hb_003405_040--Hb_018118_040 Hb_000225_050 Hb_000225_050 Hb_003405_040--Hb_000225_050 Hb_004607_100 Hb_004607_100 Hb_003405_040--Hb_004607_100 Hb_007333_020 Hb_007333_020 Hb_003405_040--Hb_007333_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.31419 0.0948306 0 0.103052 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.204183 0 0 0

CAGE analysis