Hb_003405_040

Information

Type -
Description -
Location Contig3405: 75952-77234
Sequence    

Annotation

kegg
ID pop:POPTR_2170s00200g
description hypothetical protein
nr
ID XP_011019172.1
description PREDICTED: uncharacterized protein LOC105121978 [Populus euphratica]
swissprot
ID -
description -
trembl
ID U7DUQ8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_2170s00200g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35615: 76801-77148
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003405_040 0.0 - - PREDICTED: uncharacterized protein LOC105121978 [Populus euphratica]
2 Hb_000832_330 0.2196786313 - - PREDICTED: uncharacterized protein LOC102661627 [Glycine max]
3 Hb_070745_010 0.2900153747 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
4 Hb_018118_040 0.2930148675 - - -
5 Hb_000225_050 0.2996739662 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
6 Hb_004607_100 0.2999683541 - - PREDICTED: uncharacterized protein LOC103445866 [Malus domestica]
7 Hb_007333_020 0.3057568957 - - -
8 Hb_118346_010 0.3154406353 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
9 Hb_107281_010 0.3177003729 - - protein with unknown function [Ricinus communis]
10 Hb_002157_250 0.3277282632 - - Pectinesterase-4 precursor, putative [Ricinus communis]
11 Hb_002345_080 0.329149757 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_136850_040 0.3332219251 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_004800_050 0.3337857228 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
14 Hb_000184_080 0.3363565198 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
15 Hb_003228_070 0.3417104227 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001414_130 0.3463072502 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
17 Hb_153161_010 0.3496304635 - - phospholipid-transporting atpase, putative [Ricinus communis]
18 Hb_001935_210 0.3551878103 - - -
19 Hb_023001_070 0.3585334727 - - PREDICTED: dnaJ protein ERDJ3A-like [Eucalyptus grandis]
20 Hb_000237_130 0.360696138 - - -

Gene co-expression network

sample Hb_003405_040 Hb_003405_040 Hb_000832_330 Hb_000832_330 Hb_003405_040--Hb_000832_330 Hb_070745_010 Hb_070745_010 Hb_003405_040--Hb_070745_010 Hb_018118_040 Hb_018118_040 Hb_003405_040--Hb_018118_040 Hb_000225_050 Hb_000225_050 Hb_003405_040--Hb_000225_050 Hb_004607_100 Hb_004607_100 Hb_003405_040--Hb_004607_100 Hb_007333_020 Hb_007333_020 Hb_003405_040--Hb_007333_020 Hb_001935_210 Hb_001935_210 Hb_000832_330--Hb_001935_210 Hb_001414_130 Hb_001414_130 Hb_000832_330--Hb_001414_130 Hb_000832_330--Hb_018118_040 Hb_000025_550 Hb_000025_550 Hb_000832_330--Hb_000025_550 Hb_118346_010 Hb_118346_010 Hb_000832_330--Hb_118346_010 Hb_070745_010--Hb_007333_020 Hb_006816_510 Hb_006816_510 Hb_070745_010--Hb_006816_510 Hb_000171_040 Hb_000171_040 Hb_070745_010--Hb_000171_040 Hb_000146_060 Hb_000146_060 Hb_070745_010--Hb_000146_060 Hb_008064_010 Hb_008064_010 Hb_070745_010--Hb_008064_010 Hb_136850_040 Hb_136850_040 Hb_070745_010--Hb_136850_040 Hb_087086_020 Hb_087086_020 Hb_018118_040--Hb_087086_020 Hb_000152_510 Hb_000152_510 Hb_018118_040--Hb_000152_510 Hb_000538_010 Hb_000538_010 Hb_018118_040--Hb_000538_010 Hb_018118_040--Hb_000225_050 Hb_004204_050 Hb_004204_050 Hb_018118_040--Hb_004204_050 Hb_025214_090 Hb_025214_090 Hb_018118_040--Hb_025214_090 Hb_011885_010 Hb_011885_010 Hb_000225_050--Hb_011885_010 Hb_009372_010 Hb_009372_010 Hb_000225_050--Hb_009372_010 Hb_153161_010 Hb_153161_010 Hb_000225_050--Hb_153161_010 Hb_021576_140 Hb_021576_140 Hb_000225_050--Hb_021576_140 Hb_028795_010 Hb_028795_010 Hb_000225_050--Hb_028795_010 Hb_000230_070 Hb_000230_070 Hb_004607_100--Hb_000230_070 Hb_003228_070 Hb_003228_070 Hb_004607_100--Hb_003228_070 Hb_143643_010 Hb_143643_010 Hb_004607_100--Hb_143643_010 Hb_002345_080 Hb_002345_080 Hb_004607_100--Hb_002345_080 Hb_000111_220 Hb_000111_220 Hb_004607_100--Hb_000111_220 Hb_004800_050 Hb_004800_050 Hb_004607_100--Hb_004800_050 Hb_007333_020--Hb_006816_510 Hb_007333_020--Hb_000171_040 Hb_007333_020--Hb_008064_010 Hb_007333_020--Hb_136850_040 Hb_007333_020--Hb_000146_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.188735 1.32007 0.496909 0 0.966636 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.194885 0 0.161343 0

CAGE analysis