Hb_143643_010

Information

Type transcription factor
Description TF Family: C2H2
Location Contig143643: 3-656
Sequence    

Annotation

kegg
ID pxb:103967596
description uncharacterized LOC103967596
nr
ID XP_009379141.1
description PREDICTED: uncharacterized protein LOC103967596 [Pyrus x bretschneideri]
swissprot
ID Q42430
description Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1
trembl
ID A0A067KEH3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11077 PE=4 SV=1
Gene Ontology
ID GO:0005488
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143643_010 0.0 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC103967596 [Pyrus x bretschneideri]
2 Hb_000230_070 0.0766686222 - - Galactose oxidase precursor, putative [Ricinus communis]
3 Hb_001369_310 0.1340572702 - - tonoplast intrinsic protein, putative [Ricinus communis]
4 Hb_004607_100 0.2174420648 - - PREDICTED: uncharacterized protein LOC103445866 [Malus domestica]
5 Hb_000111_220 0.3061580488 - - unnamed protein product [Vitis vinifera]
6 Hb_151497_010 0.3212587892 - - -
7 Hb_001907_130 0.3215844445 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
8 Hb_040948_020 0.3218771376 - - -
9 Hb_001638_100 0.3246007271 - - PREDICTED: probable protein S-acyltransferase 12 [Vitis vinifera]
10 Hb_001825_050 0.3351926019 - - -
11 Hb_002345_080 0.3358968424 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_004800_050 0.342156309 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
13 Hb_027472_130 0.3483152597 - - Cytochrome P450 [Theobroma cacao]
14 Hb_005675_060 0.3503805214 - - PREDICTED: protein NIM1-INTERACTING 2 [Jatropha curcas]
15 Hb_007694_030 0.353335378 - - hypothetical protein SORBIDRAFT_04g037485 [Sorghum bicolor]
16 Hb_004945_020 0.358355362 - - PREDICTED: probable calcium-binding protein CML30 [Vitis vinifera]
17 Hb_000803_310 0.3583617675 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
18 Hb_002710_020 0.359384114 - - -
19 Hb_004800_110 0.3595057752 - - PREDICTED: proline-rich receptor-like protein kinase PERK4 [Jatropha curcas]
20 Hb_000438_040 0.3654644515 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]

Gene co-expression network

sample Hb_143643_010 Hb_143643_010 Hb_000230_070 Hb_000230_070 Hb_143643_010--Hb_000230_070 Hb_001369_310 Hb_001369_310 Hb_143643_010--Hb_001369_310 Hb_004607_100 Hb_004607_100 Hb_143643_010--Hb_004607_100 Hb_000111_220 Hb_000111_220 Hb_143643_010--Hb_000111_220 Hb_151497_010 Hb_151497_010 Hb_143643_010--Hb_151497_010 Hb_001907_130 Hb_001907_130 Hb_143643_010--Hb_001907_130 Hb_000230_070--Hb_001369_310 Hb_000230_070--Hb_004607_100 Hb_001638_100 Hb_001638_100 Hb_000230_070--Hb_001638_100 Hb_040948_020 Hb_040948_020 Hb_000230_070--Hb_040948_020 Hb_000230_070--Hb_000111_220 Hb_001369_310--Hb_004607_100 Hb_001369_310--Hb_040948_020 Hb_002345_080 Hb_002345_080 Hb_001369_310--Hb_002345_080 Hb_004800_110 Hb_004800_110 Hb_001369_310--Hb_004800_110 Hb_003228_070 Hb_003228_070 Hb_004607_100--Hb_003228_070 Hb_004607_100--Hb_002345_080 Hb_004607_100--Hb_000111_220 Hb_004800_050 Hb_004800_050 Hb_004607_100--Hb_004800_050 Hb_000836_590 Hb_000836_590 Hb_000111_220--Hb_000836_590 Hb_000893_050 Hb_000893_050 Hb_000111_220--Hb_000893_050 Hb_004785_120 Hb_004785_120 Hb_000111_220--Hb_004785_120 Hb_001021_110 Hb_001021_110 Hb_000111_220--Hb_001021_110 Hb_055147_010 Hb_055147_010 Hb_000111_220--Hb_055147_010 Hb_000438_040 Hb_000438_040 Hb_000111_220--Hb_000438_040 Hb_030827_050 Hb_030827_050 Hb_151497_010--Hb_030827_050 Hb_007101_220 Hb_007101_220 Hb_151497_010--Hb_007101_220 Hb_010863_040 Hb_010863_040 Hb_151497_010--Hb_010863_040 Hb_000069_080 Hb_000069_080 Hb_151497_010--Hb_000069_080 Hb_002835_130 Hb_002835_130 Hb_151497_010--Hb_002835_130 Hb_001545_230 Hb_001545_230 Hb_151497_010--Hb_001545_230 Hb_011344_100 Hb_011344_100 Hb_001907_130--Hb_011344_100 Hb_170516_010 Hb_170516_010 Hb_001907_130--Hb_170516_010 Hb_115116_010 Hb_115116_010 Hb_001907_130--Hb_115116_010 Hb_005675_060 Hb_005675_060 Hb_001907_130--Hb_005675_060 Hb_065452_010 Hb_065452_010 Hb_001907_130--Hb_065452_010 Hb_000803_310 Hb_000803_310 Hb_001907_130--Hb_000803_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0324971 0.0583549 0 0.0386919 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0285703 0

CAGE analysis