Hb_040948_020

Information

Type -
Description -
Location Contig40948: 15051-17131
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_040948_020 0.0 - - -
2 Hb_002345_080 0.1308463463 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_001638_100 0.1506590675 - - PREDICTED: probable protein S-acyltransferase 12 [Vitis vinifera]
4 Hb_004800_050 0.183153005 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
5 Hb_001501_040 0.237988771 - - PREDICTED: uncharacterized protein LOC102663792 [Glycine max]
6 Hb_004607_100 0.2701757161 - - PREDICTED: uncharacterized protein LOC103445866 [Malus domestica]
7 Hb_001369_310 0.2807009534 - - tonoplast intrinsic protein, putative [Ricinus communis]
8 Hb_001031_060 0.3057934081 - - PREDICTED: uncharacterized protein LOC103940329 [Pyrus x bretschneideri]
9 Hb_005016_180 0.3068616851 - - phosphoglycerate kinase, putative [Ricinus communis]
10 Hb_000230_070 0.3078206912 - - Galactose oxidase precursor, putative [Ricinus communis]
11 Hb_000510_220 0.3173058821 - - -
12 Hb_143643_010 0.3218771376 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC103967596 [Pyrus x bretschneideri]
13 Hb_003228_070 0.3279925319 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000200_260 0.3282495693 - - PREDICTED: uncharacterized protein LOC104232531 isoform X2 [Nicotiana sylvestris]
15 Hb_000212_340 0.3288331757 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008014_080 0.3290046434 - - PREDICTED: uncharacterized protein LOC103848614 [Brassica rapa]
17 Hb_072639_010 0.3291799096 - - JHL22C18.10 [Jatropha curcas]
18 Hb_000053_090 0.3292077339 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Populus euphratica]
19 Hb_000445_340 0.32984888 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003866_010 0.3314562665 - - Polyprotein, putative [Solanum demissum]

Gene co-expression network

sample Hb_040948_020 Hb_040948_020 Hb_002345_080 Hb_002345_080 Hb_040948_020--Hb_002345_080 Hb_001638_100 Hb_001638_100 Hb_040948_020--Hb_001638_100 Hb_004800_050 Hb_004800_050 Hb_040948_020--Hb_004800_050 Hb_001501_040 Hb_001501_040 Hb_040948_020--Hb_001501_040 Hb_004607_100 Hb_004607_100 Hb_040948_020--Hb_004607_100 Hb_001369_310 Hb_001369_310 Hb_040948_020--Hb_001369_310 Hb_002345_080--Hb_004800_050 Hb_002345_080--Hb_004607_100 Hb_002345_080--Hb_001638_100 Hb_003228_070 Hb_003228_070 Hb_002345_080--Hb_003228_070 Hb_002345_080--Hb_001501_040 Hb_001638_100--Hb_004800_050 Hb_001638_100--Hb_001501_040 Hb_005348_130 Hb_005348_130 Hb_001638_100--Hb_005348_130 Hb_001638_100--Hb_004607_100 Hb_004800_050--Hb_004607_100 Hb_004800_050--Hb_001501_040 Hb_000123_100 Hb_000123_100 Hb_004800_050--Hb_000123_100 Hb_001031_060 Hb_001031_060 Hb_001501_040--Hb_001031_060 Hb_000510_220 Hb_000510_220 Hb_001501_040--Hb_000510_220 Hb_002426_010 Hb_002426_010 Hb_001501_040--Hb_002426_010 Hb_000230_070 Hb_000230_070 Hb_004607_100--Hb_000230_070 Hb_004607_100--Hb_003228_070 Hb_143643_010 Hb_143643_010 Hb_004607_100--Hb_143643_010 Hb_000111_220 Hb_000111_220 Hb_004607_100--Hb_000111_220 Hb_001369_310--Hb_143643_010 Hb_001369_310--Hb_000230_070 Hb_001369_310--Hb_004607_100 Hb_001369_310--Hb_002345_080 Hb_004800_110 Hb_004800_110 Hb_001369_310--Hb_004800_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0587232 0.124551 0 0.117606 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis