Hb_001501_040

Information

Type -
Description -
Location Contig1501: 46142-48504
Sequence    

Annotation

kegg
ID gmx:102663792
description uncharacterized LOC102663792
nr
ID XP_006603459.1
description PREDICTED: uncharacterized protein LOC102663792 [Glycine max]
swissprot
ID -
description -
trembl
ID A0A067DA53
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g039613mg PE=4 SV=1
Gene Ontology
ID GO:0004672
description wall-associated receptor kinase-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001501_040 0.0 - - PREDICTED: uncharacterized protein LOC102663792 [Glycine max]
2 Hb_001031_060 0.1532913268 - - PREDICTED: uncharacterized protein LOC103940329 [Pyrus x bretschneideri]
3 Hb_000510_220 0.1749407589 - - -
4 Hb_001638_100 0.2197693924 - - PREDICTED: probable protein S-acyltransferase 12 [Vitis vinifera]
5 Hb_040948_020 0.237988771 - - -
6 Hb_002426_010 0.2496733157 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
7 Hb_004800_050 0.2567797048 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
8 Hb_002345_080 0.2612433368 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_007879_010 0.2930443358 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
10 Hb_002374_330 0.2951811957 - - -
11 Hb_004607_100 0.2975787766 - - PREDICTED: uncharacterized protein LOC103445866 [Malus domestica]
12 Hb_011161_030 0.3205245888 - - PREDICTED: uncharacterized protein LOC105638906 [Jatropha curcas]
13 Hb_004483_020 0.3226937552 - - -
14 Hb_008221_130 0.3276172228 - - hypothetical protein VITISV_016971 [Vitis vinifera]
15 Hb_003228_070 0.3292047531 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009189_060 0.3300199435 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
17 Hb_000172_490 0.3316218049 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
18 Hb_027472_130 0.3393322855 - - Cytochrome P450 [Theobroma cacao]
19 Hb_000230_070 0.3408569496 - - Galactose oxidase precursor, putative [Ricinus communis]
20 Hb_005016_180 0.346371194 - - phosphoglycerate kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001501_040 Hb_001501_040 Hb_001031_060 Hb_001031_060 Hb_001501_040--Hb_001031_060 Hb_000510_220 Hb_000510_220 Hb_001501_040--Hb_000510_220 Hb_001638_100 Hb_001638_100 Hb_001501_040--Hb_001638_100 Hb_040948_020 Hb_040948_020 Hb_001501_040--Hb_040948_020 Hb_002426_010 Hb_002426_010 Hb_001501_040--Hb_002426_010 Hb_004800_050 Hb_004800_050 Hb_001501_040--Hb_004800_050 Hb_001031_060--Hb_000510_220 Hb_001031_060--Hb_002426_010 Hb_009189_060 Hb_009189_060 Hb_001031_060--Hb_009189_060 Hb_006634_010 Hb_006634_010 Hb_001031_060--Hb_006634_010 Hb_007879_010 Hb_007879_010 Hb_001031_060--Hb_007879_010 Hb_000510_220--Hb_002426_010 Hb_000510_220--Hb_009189_060 Hb_004483_020 Hb_004483_020 Hb_000510_220--Hb_004483_020 Hb_000510_220--Hb_006634_010 Hb_001638_100--Hb_040948_020 Hb_001638_100--Hb_004800_050 Hb_005348_130 Hb_005348_130 Hb_001638_100--Hb_005348_130 Hb_002345_080 Hb_002345_080 Hb_001638_100--Hb_002345_080 Hb_004607_100 Hb_004607_100 Hb_001638_100--Hb_004607_100 Hb_040948_020--Hb_002345_080 Hb_040948_020--Hb_004800_050 Hb_040948_020--Hb_004607_100 Hb_001369_310 Hb_001369_310 Hb_040948_020--Hb_001369_310 Hb_002426_010--Hb_004483_020 Hb_002426_010--Hb_009189_060 Hb_089341_010 Hb_089341_010 Hb_002426_010--Hb_089341_010 Hb_002426_010--Hb_006634_010 Hb_004800_050--Hb_002345_080 Hb_004800_050--Hb_004607_100 Hb_000123_100 Hb_000123_100 Hb_004800_050--Hb_000123_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0387276 0.0726996 0 0.0395014 0.0137714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis