Hb_009189_060

Information

Type -
Description -
Location Contig9189: 47170-48561
Sequence    

Annotation

kegg
ID pop:POPTR_0015s02060g
description POPTRDRAFT_807852; hypothetical protein
nr
ID XP_012089383.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
swissprot
ID Q5G1T1
description Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1
trembl
ID A0A067JII0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23574 PE=4 SV=1
Gene Ontology
ID GO:0016772
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009189_060 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
2 Hb_006634_010 0.0665984824 - - -
3 Hb_002426_010 0.1837806825 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_000510_220 0.1942290309 - - -
5 Hb_171273_010 0.2156369704 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
6 Hb_001031_060 0.2203374859 - - PREDICTED: uncharacterized protein LOC103940329 [Pyrus x bretschneideri]
7 Hb_048207_010 0.2323705475 - - heat-shock protein, putative [Ricinus communis]
8 Hb_000796_060 0.2597372623 - - Glycogenin-2 [Aegilops tauschii]
9 Hb_089341_010 0.2856789441 - - Uncharacterized protein TCM_018339 [Theobroma cacao]
10 Hb_008053_020 0.2921618462 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_001279_230 0.3104540876 - - PREDICTED: class I heat shock protein-like [Jatropha curcas]
12 Hb_053643_010 0.3157300986 - - Zinc finger protein GIS2 [Medicago truncatula]
13 Hb_004483_020 0.3200955088 - - -
14 Hb_003647_120 0.3211984575 - - 18.2 kDa class I heat shock family protein [Populus trichocarpa]
15 Hb_003337_070 0.3213358041 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
16 Hb_168893_010 0.3238544442 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
17 Hb_000398_130 0.3290022465 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
18 Hb_001501_040 0.3300199435 - - PREDICTED: uncharacterized protein LOC102663792 [Glycine max]
19 Hb_009189_030 0.3334416727 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
20 Hb_009922_010 0.3364006233 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_009189_060 Hb_009189_060 Hb_006634_010 Hb_006634_010 Hb_009189_060--Hb_006634_010 Hb_002426_010 Hb_002426_010 Hb_009189_060--Hb_002426_010 Hb_000510_220 Hb_000510_220 Hb_009189_060--Hb_000510_220 Hb_171273_010 Hb_171273_010 Hb_009189_060--Hb_171273_010 Hb_001031_060 Hb_001031_060 Hb_009189_060--Hb_001031_060 Hb_048207_010 Hb_048207_010 Hb_009189_060--Hb_048207_010 Hb_006634_010--Hb_171273_010 Hb_006634_010--Hb_048207_010 Hb_006634_010--Hb_002426_010 Hb_006634_010--Hb_001031_060 Hb_006634_010--Hb_000510_220 Hb_002426_010--Hb_000510_220 Hb_004483_020 Hb_004483_020 Hb_002426_010--Hb_004483_020 Hb_089341_010 Hb_089341_010 Hb_002426_010--Hb_089341_010 Hb_002426_010--Hb_001031_060 Hb_000510_220--Hb_001031_060 Hb_001501_040 Hb_001501_040 Hb_000510_220--Hb_001501_040 Hb_000510_220--Hb_004483_020 Hb_008053_020 Hb_008053_020 Hb_171273_010--Hb_008053_020 Hb_000796_060 Hb_000796_060 Hb_171273_010--Hb_000796_060 Hb_171273_010--Hb_048207_010 Hb_000035_310 Hb_000035_310 Hb_171273_010--Hb_000035_310 Hb_001031_060--Hb_001501_040 Hb_007879_010 Hb_007879_010 Hb_001031_060--Hb_007879_010 Hb_048207_010--Hb_000796_060 Hb_001104_040 Hb_001104_040 Hb_048207_010--Hb_001104_040 Hb_001279_230 Hb_001279_230 Hb_048207_010--Hb_001279_230 Hb_005730_100 Hb_005730_100 Hb_048207_010--Hb_005730_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0462439 0.0365125 0 0.110984 0.0608917
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis