Hb_000510_220

Information

Type -
Description -
Location Contig510: 191559-192274
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000510_220 0.0 - - -
2 Hb_002426_010 0.0958781342 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
3 Hb_001031_060 0.1574250445 - - PREDICTED: uncharacterized protein LOC103940329 [Pyrus x bretschneideri]
4 Hb_001501_040 0.1749407589 - - PREDICTED: uncharacterized protein LOC102663792 [Glycine max]
5 Hb_009189_060 0.1942290309 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
6 Hb_004483_020 0.2030832977 - - -
7 Hb_006634_010 0.254707672 - - -
8 Hb_089341_010 0.2776244924 - - Uncharacterized protein TCM_018339 [Theobroma cacao]
9 Hb_002345_080 0.2826407552 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_002374_330 0.3024873292 - - -
11 Hb_040948_020 0.3173058821 - - -
12 Hb_004800_050 0.335974949 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
13 Hb_001506_030 0.3362338917 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
14 Hb_004607_100 0.3419910803 - - PREDICTED: uncharacterized protein LOC103445866 [Malus domestica]
15 Hb_003228_070 0.3420766176 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010447_020 0.344971914 - - PREDICTED: uncharacterized protein LOC105797464 [Gossypium raimondii]
17 Hb_008221_130 0.3455134966 - - hypothetical protein VITISV_016971 [Vitis vinifera]
18 Hb_001303_070 0.3484690502 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X2 [Prunus mume]
19 Hb_171273_010 0.3522642792 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
20 Hb_107281_010 0.3527469269 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_000510_220 Hb_000510_220 Hb_002426_010 Hb_002426_010 Hb_000510_220--Hb_002426_010 Hb_001031_060 Hb_001031_060 Hb_000510_220--Hb_001031_060 Hb_001501_040 Hb_001501_040 Hb_000510_220--Hb_001501_040 Hb_009189_060 Hb_009189_060 Hb_000510_220--Hb_009189_060 Hb_004483_020 Hb_004483_020 Hb_000510_220--Hb_004483_020 Hb_006634_010 Hb_006634_010 Hb_000510_220--Hb_006634_010 Hb_002426_010--Hb_004483_020 Hb_002426_010--Hb_009189_060 Hb_089341_010 Hb_089341_010 Hb_002426_010--Hb_089341_010 Hb_002426_010--Hb_001031_060 Hb_002426_010--Hb_006634_010 Hb_001031_060--Hb_001501_040 Hb_001031_060--Hb_009189_060 Hb_001031_060--Hb_006634_010 Hb_007879_010 Hb_007879_010 Hb_001031_060--Hb_007879_010 Hb_001638_100 Hb_001638_100 Hb_001501_040--Hb_001638_100 Hb_040948_020 Hb_040948_020 Hb_001501_040--Hb_040948_020 Hb_001501_040--Hb_002426_010 Hb_004800_050 Hb_004800_050 Hb_001501_040--Hb_004800_050 Hb_009189_060--Hb_006634_010 Hb_171273_010 Hb_171273_010 Hb_009189_060--Hb_171273_010 Hb_048207_010 Hb_048207_010 Hb_009189_060--Hb_048207_010 Hb_004483_020--Hb_089341_010 Hb_004108_010 Hb_004108_010 Hb_004483_020--Hb_004108_010 Hb_093432_020 Hb_093432_020 Hb_004483_020--Hb_093432_020 Hb_002374_330 Hb_002374_330 Hb_004483_020--Hb_002374_330 Hb_006634_010--Hb_171273_010 Hb_006634_010--Hb_048207_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.32947 7.9317 0 9.44924 4.68153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis