Hb_004800_050

Information

Type -
Description -
Location Contig4800: 51884-53302
Sequence    

Annotation

kegg
ID cic:CICLE_v10027476mg
description hypothetical protein
nr
ID XP_012084472.1
description PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JUC5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20029 PE=4 SV=1
Gene Ontology
ID GO:0005634
description spindle assembly abnormal protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004800_050 0.0 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
2 Hb_040948_020 0.183153005 - - -
3 Hb_001638_100 0.1863978204 - - PREDICTED: probable protein S-acyltransferase 12 [Vitis vinifera]
4 Hb_002345_080 0.1945971884 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_004607_100 0.2537694688 - - PREDICTED: uncharacterized protein LOC103445866 [Malus domestica]
6 Hb_001501_040 0.2567797048 - - PREDICTED: uncharacterized protein LOC102663792 [Glycine max]
7 Hb_000123_100 0.2634066539 - - Uncharacterized protein TCM_024608 [Theobroma cacao]
8 Hb_003228_070 0.2834534717 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000003_140 0.2956294302 - - hypothetical protein glysoja_047034, partial [Glycine soja]
10 Hb_004524_070 0.3092692078 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
11 Hb_002374_330 0.317723358 - - -
12 Hb_000230_070 0.3195832431 - - Galactose oxidase precursor, putative [Ricinus communis]
13 Hb_011161_030 0.327521969 - - PREDICTED: uncharacterized protein LOC105638906 [Jatropha curcas]
14 Hb_129459_010 0.3278844611 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18840-like [Populus euphratica]
15 Hb_160233_020 0.3279944446 - - -
16 Hb_005016_180 0.3304088218 - - phosphoglycerate kinase, putative [Ricinus communis]
17 Hb_003405_040 0.3337857228 - - PREDICTED: uncharacterized protein LOC105121978 [Populus euphratica]
18 Hb_000510_220 0.335974949 - - -
19 Hb_001369_310 0.3413566951 - - tonoplast intrinsic protein, putative [Ricinus communis]
20 Hb_143643_010 0.342156309 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC103967596 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_004800_050 Hb_004800_050 Hb_040948_020 Hb_040948_020 Hb_004800_050--Hb_040948_020 Hb_001638_100 Hb_001638_100 Hb_004800_050--Hb_001638_100 Hb_002345_080 Hb_002345_080 Hb_004800_050--Hb_002345_080 Hb_004607_100 Hb_004607_100 Hb_004800_050--Hb_004607_100 Hb_001501_040 Hb_001501_040 Hb_004800_050--Hb_001501_040 Hb_000123_100 Hb_000123_100 Hb_004800_050--Hb_000123_100 Hb_040948_020--Hb_002345_080 Hb_040948_020--Hb_001638_100 Hb_040948_020--Hb_001501_040 Hb_040948_020--Hb_004607_100 Hb_001369_310 Hb_001369_310 Hb_040948_020--Hb_001369_310 Hb_001638_100--Hb_001501_040 Hb_005348_130 Hb_005348_130 Hb_001638_100--Hb_005348_130 Hb_001638_100--Hb_002345_080 Hb_001638_100--Hb_004607_100 Hb_002345_080--Hb_004607_100 Hb_003228_070 Hb_003228_070 Hb_002345_080--Hb_003228_070 Hb_002345_080--Hb_001501_040 Hb_000230_070 Hb_000230_070 Hb_004607_100--Hb_000230_070 Hb_004607_100--Hb_003228_070 Hb_143643_010 Hb_143643_010 Hb_004607_100--Hb_143643_010 Hb_000111_220 Hb_000111_220 Hb_004607_100--Hb_000111_220 Hb_001031_060 Hb_001031_060 Hb_001501_040--Hb_001031_060 Hb_000510_220 Hb_000510_220 Hb_001501_040--Hb_000510_220 Hb_002426_010 Hb_002426_010 Hb_001501_040--Hb_002426_010 Hb_113823_010 Hb_113823_010 Hb_000123_100--Hb_113823_010 Hb_059301_010 Hb_059301_010 Hb_000123_100--Hb_059301_010 Hb_160233_020 Hb_160233_020 Hb_000123_100--Hb_160233_020 Hb_004640_040 Hb_004640_040 Hb_000123_100--Hb_004640_040 Hb_001214_170 Hb_001214_170 Hb_000123_100--Hb_001214_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.024171 0.141936 0.224489 0 0.147729 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis