Hb_001369_310

Information

Type -
Description -
Location Contig1369: 295749-296929
Sequence    

Annotation

kegg
ID rcu:RCOM_1500500
description tonoplast intrinsic protein, putative
nr
ID XP_002510961.1
description tonoplast intrinsic protein, putative [Ricinus communis]
swissprot
ID Q9STX9
description Probable aquaporin TIP5-1 OS=Arabidopsis thaliana GN=TIP5-1 PE=2 SV=1
trembl
ID B9R9T6
description Tonoplast intrinsic protein, putative OS=Ricinus communis GN=RCOM_1500500 PE=3 SV=1
Gene Ontology
ID GO:0005739
description probable aquaporin tip5-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10166: 297890-298999
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001369_310 0.0 - - tonoplast intrinsic protein, putative [Ricinus communis]
2 Hb_143643_010 0.1340572702 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC103967596 [Pyrus x bretschneideri]
3 Hb_000230_070 0.1844426475 - - Galactose oxidase precursor, putative [Ricinus communis]
4 Hb_004607_100 0.2621659321 - - PREDICTED: uncharacterized protein LOC103445866 [Malus domestica]
5 Hb_040948_020 0.2807009534 - - -
6 Hb_002345_080 0.2989200375 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_004800_110 0.3166311195 - - PREDICTED: proline-rich receptor-like protein kinase PERK4 [Jatropha curcas]
8 Hb_003811_010 0.3167516392 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
9 Hb_002710_020 0.3185356876 - - -
10 Hb_007694_030 0.3186760526 - - hypothetical protein SORBIDRAFT_04g037485 [Sorghum bicolor]
11 Hb_002485_020 0.3193496392 - - metal transport family protein [Populus trichocarpa]
12 Hb_001825_050 0.3215811707 - - -
13 Hb_151497_010 0.3274834198 - - -
14 Hb_001907_130 0.3290997593 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
15 Hb_001638_100 0.34092867 - - PREDICTED: probable protein S-acyltransferase 12 [Vitis vinifera]
16 Hb_004800_050 0.3413566951 - - PREDICTED: uncharacterized protein LOC105643859 [Jatropha curcas]
17 Hb_027472_130 0.3582163423 - - Cytochrome P450 [Theobroma cacao]
18 Hb_030827_050 0.3608364899 - - hypothetical protein CISIN_1g040641mg, partial [Citrus sinensis]
19 Hb_118346_010 0.3667021696 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
20 Hb_003405_040 0.3685048822 - - PREDICTED: uncharacterized protein LOC105121978 [Populus euphratica]

Gene co-expression network

sample Hb_001369_310 Hb_001369_310 Hb_143643_010 Hb_143643_010 Hb_001369_310--Hb_143643_010 Hb_000230_070 Hb_000230_070 Hb_001369_310--Hb_000230_070 Hb_004607_100 Hb_004607_100 Hb_001369_310--Hb_004607_100 Hb_040948_020 Hb_040948_020 Hb_001369_310--Hb_040948_020 Hb_002345_080 Hb_002345_080 Hb_001369_310--Hb_002345_080 Hb_004800_110 Hb_004800_110 Hb_001369_310--Hb_004800_110 Hb_143643_010--Hb_000230_070 Hb_143643_010--Hb_004607_100 Hb_000111_220 Hb_000111_220 Hb_143643_010--Hb_000111_220 Hb_151497_010 Hb_151497_010 Hb_143643_010--Hb_151497_010 Hb_001907_130 Hb_001907_130 Hb_143643_010--Hb_001907_130 Hb_000230_070--Hb_004607_100 Hb_001638_100 Hb_001638_100 Hb_000230_070--Hb_001638_100 Hb_000230_070--Hb_040948_020 Hb_000230_070--Hb_000111_220 Hb_003228_070 Hb_003228_070 Hb_004607_100--Hb_003228_070 Hb_004607_100--Hb_002345_080 Hb_004607_100--Hb_000111_220 Hb_004800_050 Hb_004800_050 Hb_004607_100--Hb_004800_050 Hb_040948_020--Hb_002345_080 Hb_040948_020--Hb_001638_100 Hb_040948_020--Hb_004800_050 Hb_001501_040 Hb_001501_040 Hb_040948_020--Hb_001501_040 Hb_040948_020--Hb_004607_100 Hb_002345_080--Hb_004800_050 Hb_002345_080--Hb_001638_100 Hb_002345_080--Hb_003228_070 Hb_002345_080--Hb_001501_040 Hb_002710_020 Hb_002710_020 Hb_004800_110--Hb_002710_020 Hb_007694_030 Hb_007694_030 Hb_004800_110--Hb_007694_030 Hb_003811_010 Hb_003811_010 Hb_004800_110--Hb_003811_010 Hb_000069_080 Hb_000069_080 Hb_004800_110--Hb_000069_080 Hb_002485_020 Hb_002485_020 Hb_004800_110--Hb_002485_020 Hb_002835_130 Hb_002835_130 Hb_004800_110--Hb_002835_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.026393 0.0488354 0 0.0631443 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0230878 0

CAGE analysis