Hb_000832_330

Information

Type -
Description -
Location Contig832: 287120-287718
Sequence    

Annotation

kegg
ID gmx:102661627
description uncharacterized LOC102661627
nr
ID XP_006591726.1
description PREDICTED: uncharacterized protein LOC102661627 [Glycine max]
swissprot
ID -
description -
trembl
ID A0A0B2SM85
description Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_030096 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000832_330 0.0 - - PREDICTED: uncharacterized protein LOC102661627 [Glycine max]
2 Hb_003405_040 0.2196786313 - - PREDICTED: uncharacterized protein LOC105121978 [Populus euphratica]
3 Hb_001935_210 0.2474021386 - - -
4 Hb_001414_130 0.2650879183 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
5 Hb_018118_040 0.2799940152 - - -
6 Hb_000025_550 0.2809682179 - - conserved hypothetical protein [Ricinus communis]
7 Hb_118346_010 0.2981758551 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
8 Hb_000516_070 0.3270836525 - - -
9 Hb_004330_030 0.331066495 - - -
10 Hb_000627_100 0.3343536073 - - -
11 Hb_002631_220 0.3362957173 - - Patellin-4, putative [Ricinus communis]
12 Hb_087086_020 0.3414711433 - - hypothetical protein JCGZ_02762 [Jatropha curcas]
13 Hb_107281_010 0.3540528016 - - protein with unknown function [Ricinus communis]
14 Hb_000826_060 0.3571915214 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
15 Hb_000107_320 0.3586294546 - - hypothetical protein POPTR_0004s21930g [Populus trichocarpa]
16 Hb_005975_020 0.361164122 - - -
17 Hb_020248_010 0.3636374976 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
18 Hb_057098_010 0.3642321999 - - -
19 Hb_040991_010 0.3644363996 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
20 Hb_021530_010 0.3663623479 - - PREDICTED: la protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000832_330 Hb_000832_330 Hb_003405_040 Hb_003405_040 Hb_000832_330--Hb_003405_040 Hb_001935_210 Hb_001935_210 Hb_000832_330--Hb_001935_210 Hb_001414_130 Hb_001414_130 Hb_000832_330--Hb_001414_130 Hb_018118_040 Hb_018118_040 Hb_000832_330--Hb_018118_040 Hb_000025_550 Hb_000025_550 Hb_000832_330--Hb_000025_550 Hb_118346_010 Hb_118346_010 Hb_000832_330--Hb_118346_010 Hb_070745_010 Hb_070745_010 Hb_003405_040--Hb_070745_010 Hb_003405_040--Hb_018118_040 Hb_000225_050 Hb_000225_050 Hb_003405_040--Hb_000225_050 Hb_004607_100 Hb_004607_100 Hb_003405_040--Hb_004607_100 Hb_007333_020 Hb_007333_020 Hb_003405_040--Hb_007333_020 Hb_040991_010 Hb_040991_010 Hb_001935_210--Hb_040991_010 Hb_001935_210--Hb_001414_130 Hb_059924_010 Hb_059924_010 Hb_001935_210--Hb_059924_010 Hb_001811_010 Hb_001811_010 Hb_001935_210--Hb_001811_010 Hb_004330_030 Hb_004330_030 Hb_001935_210--Hb_004330_030 Hb_094101_010 Hb_094101_010 Hb_001414_130--Hb_094101_010 Hb_003311_050 Hb_003311_050 Hb_001414_130--Hb_003311_050 Hb_005269_030 Hb_005269_030 Hb_001414_130--Hb_005269_030 Hb_004088_060 Hb_004088_060 Hb_001414_130--Hb_004088_060 Hb_001414_130--Hb_018118_040 Hb_087086_020 Hb_087086_020 Hb_018118_040--Hb_087086_020 Hb_000152_510 Hb_000152_510 Hb_018118_040--Hb_000152_510 Hb_000538_010 Hb_000538_010 Hb_018118_040--Hb_000538_010 Hb_018118_040--Hb_000225_050 Hb_004204_050 Hb_004204_050 Hb_018118_040--Hb_004204_050 Hb_025214_090 Hb_025214_090 Hb_018118_040--Hb_025214_090 Hb_020248_010 Hb_020248_010 Hb_000025_550--Hb_020248_010 Hb_009012_010 Hb_009012_010 Hb_000025_550--Hb_009012_010 Hb_000107_320 Hb_000107_320 Hb_000025_550--Hb_000107_320 Hb_000189_210 Hb_000189_210 Hb_000025_550--Hb_000189_210 Hb_000025_550--Hb_001414_130 Hb_014919_020 Hb_014919_020 Hb_118346_010--Hb_014919_020 Hb_059301_010 Hb_059301_010 Hb_118346_010--Hb_059301_010 Hb_118346_010--Hb_004330_030 Hb_001944_030 Hb_001944_030 Hb_118346_010--Hb_001944_030 Hb_001214_170 Hb_001214_170 Hb_118346_010--Hb_001214_170 Hb_113823_010 Hb_113823_010 Hb_118346_010--Hb_113823_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.125298 0.226952 0.0801539 0 0.148634 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0900583 0 0.0742708 0

CAGE analysis