Hb_001811_010

Information

Type -
Description -
Location Contig1811: 10949-11494
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17563: 11373-11836
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001811_010 0.0 - - -
2 Hb_001454_240 0.3267303113 - - translationally controlled tumor protein [Hevea brasiliensis]
3 Hb_004631_220 0.3330647148 - - -
4 Hb_055773_010 0.3351929372 - - -
5 Hb_001935_210 0.3412397102 - - -
6 Hb_000050_090 0.3429490482 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
7 Hb_000140_150 0.3458764995 - - -
8 Hb_011716_040 0.3515733781 - - -
9 Hb_027380_160 0.3579730053 - - -
10 Hb_138652_010 0.3594951658 - - hypothetical protein JCGZ_13474 [Jatropha curcas]
11 Hb_000099_220 0.3598902419 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
12 Hb_161709_010 0.36124382 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_064885_020 0.3651523306 - - -
14 Hb_000703_240 0.3653185668 - - -
15 Hb_103624_010 0.3657151354 - - PREDICTED: protein catecholamines up-like [Jatropha curcas]
16 Hb_018118_040 0.366755324 - - -
17 Hb_017987_070 0.3669188927 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
18 Hb_000340_010 0.3689925908 - - -
19 Hb_096962_020 0.3694753551 - - -
20 Hb_000614_080 0.3712637258 - - -

Gene co-expression network

sample Hb_001811_010 Hb_001811_010 Hb_001454_240 Hb_001454_240 Hb_001811_010--Hb_001454_240 Hb_004631_220 Hb_004631_220 Hb_001811_010--Hb_004631_220 Hb_055773_010 Hb_055773_010 Hb_001811_010--Hb_055773_010 Hb_001935_210 Hb_001935_210 Hb_001811_010--Hb_001935_210 Hb_000050_090 Hb_000050_090 Hb_001811_010--Hb_000050_090 Hb_000140_150 Hb_000140_150 Hb_001811_010--Hb_000140_150 Hb_001584_310 Hb_001584_310 Hb_001454_240--Hb_001584_310 Hb_011360_010 Hb_011360_010 Hb_001454_240--Hb_011360_010 Hb_000023_200 Hb_000023_200 Hb_001454_240--Hb_000023_200 Hb_004324_340 Hb_004324_340 Hb_001454_240--Hb_004324_340 Hb_173953_010 Hb_173953_010 Hb_001454_240--Hb_173953_010 Hb_000703_240 Hb_000703_240 Hb_001454_240--Hb_000703_240 Hb_001277_220 Hb_001277_220 Hb_004631_220--Hb_001277_220 Hb_037226_010 Hb_037226_010 Hb_004631_220--Hb_037226_010 Hb_017987_070 Hb_017987_070 Hb_004631_220--Hb_017987_070 Hb_005298_010 Hb_005298_010 Hb_004631_220--Hb_005298_010 Hb_004129_130 Hb_004129_130 Hb_004631_220--Hb_004129_130 Hb_000009_580 Hb_000009_580 Hb_004631_220--Hb_000009_580 Hb_011457_110 Hb_011457_110 Hb_055773_010--Hb_011457_110 Hb_000614_080 Hb_000614_080 Hb_055773_010--Hb_000614_080 Hb_002843_050 Hb_002843_050 Hb_055773_010--Hb_002843_050 Hb_015401_020 Hb_015401_020 Hb_055773_010--Hb_015401_020 Hb_000076_290 Hb_000076_290 Hb_055773_010--Hb_000076_290 Hb_024399_010 Hb_024399_010 Hb_055773_010--Hb_024399_010 Hb_040991_010 Hb_040991_010 Hb_001935_210--Hb_040991_010 Hb_000832_330 Hb_000832_330 Hb_001935_210--Hb_000832_330 Hb_001414_130 Hb_001414_130 Hb_001935_210--Hb_001414_130 Hb_059924_010 Hb_059924_010 Hb_001935_210--Hb_059924_010 Hb_004330_030 Hb_004330_030 Hb_001935_210--Hb_004330_030 Hb_000050_100 Hb_000050_100 Hb_000050_090--Hb_000050_100 Hb_017987_090 Hb_017987_090 Hb_000050_090--Hb_017987_090 Hb_000703_060 Hb_000703_060 Hb_000050_090--Hb_000703_060 Hb_005702_030 Hb_005702_030 Hb_000050_090--Hb_005702_030 Hb_000050_090--Hb_000703_240 Hb_011344_170 Hb_011344_170 Hb_000050_090--Hb_011344_170 Hb_005057_010 Hb_005057_010 Hb_000140_150--Hb_005057_010 Hb_027556_010 Hb_027556_010 Hb_000140_150--Hb_027556_010 Hb_011716_040 Hb_011716_040 Hb_000140_150--Hb_011716_040 Hb_030414_050 Hb_030414_050 Hb_000140_150--Hb_030414_050 Hb_010368_070 Hb_010368_070 Hb_000140_150--Hb_010368_070 Hb_000926_270 Hb_000926_270 Hb_000140_150--Hb_000926_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.824548 0.605122 0 0 0.999762 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.380236 0.512442 0.177541 0

CAGE analysis