Hb_001277_220

Information

Type -
Description -
Location Contig1277: 187819-188770
Sequence    

Annotation

kegg
ID rcu:RCOM_0910810
description cation-transporting atpase plant, putative (EC:3.6.3.8)
nr
ID XP_012069931.1
description PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
swissprot
ID Q9LY77
description Calcium-transporting ATPase 12, plasma membrane-type OS=Arabidopsis thaliana GN=ACA12 PE=2 SV=1
trembl
ID A0A067L855
description Calcium-transporting ATPase OS=Jatropha curcas GN=JCGZ_02242 PE=3 SV=1
Gene Ontology
ID GO:0016020
description calcium-transporting atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001277_220 0.0 - - PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type [Jatropha curcas]
2 Hb_010315_050 0.1655456493 - - hypothetical protein JCGZ_25247 [Jatropha curcas]
3 Hb_000009_580 0.1822172834 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
4 Hb_002073_040 0.1902650308 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000059_040 0.1941304806 - - Uncharacterized protein TCM_020504 [Theobroma cacao]
6 Hb_001318_030 0.2004616232 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
7 Hb_026698_010 0.2017944264 - - 2,4-dienoyl-CoA reductase, putative [Ricinus communis]
8 Hb_005839_120 0.2019789015 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
9 Hb_004129_130 0.2041685506 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_055384_010 0.2042112714 - - -
11 Hb_000976_150 0.2045388274 - - PREDICTED: serine/arginine-rich splicing factor SR45 [Jatropha curcas]
12 Hb_005843_100 0.2056582311 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Jatropha curcas]
13 Hb_012395_220 0.206590201 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
14 Hb_004807_030 0.2091572466 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
15 Hb_120155_010 0.2160533461 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_017987_070 0.2167182522 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
17 Hb_004586_190 0.2204458763 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
18 Hb_112399_010 0.2238385283 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
19 Hb_005843_150 0.2238946848 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
20 Hb_000200_140 0.2242054621 - - PREDICTED: uncharacterized protein LOC104591989 [Nelumbo nucifera]

Gene co-expression network

sample Hb_001277_220 Hb_001277_220 Hb_010315_050 Hb_010315_050 Hb_001277_220--Hb_010315_050 Hb_000009_580 Hb_000009_580 Hb_001277_220--Hb_000009_580 Hb_002073_040 Hb_002073_040 Hb_001277_220--Hb_002073_040 Hb_000059_040 Hb_000059_040 Hb_001277_220--Hb_000059_040 Hb_001318_030 Hb_001318_030 Hb_001277_220--Hb_001318_030 Hb_026698_010 Hb_026698_010 Hb_001277_220--Hb_026698_010 Hb_004586_190 Hb_004586_190 Hb_010315_050--Hb_004586_190 Hb_010315_050--Hb_000059_040 Hb_005839_120 Hb_005839_120 Hb_010315_050--Hb_005839_120 Hb_011671_330 Hb_011671_330 Hb_010315_050--Hb_011671_330 Hb_006478_110 Hb_006478_110 Hb_010315_050--Hb_006478_110 Hb_003106_040 Hb_003106_040 Hb_000009_580--Hb_003106_040 Hb_000665_010 Hb_000665_010 Hb_000009_580--Hb_000665_010 Hb_003517_060 Hb_003517_060 Hb_000009_580--Hb_003517_060 Hb_096224_040 Hb_096224_040 Hb_000009_580--Hb_096224_040 Hb_001053_030 Hb_001053_030 Hb_000009_580--Hb_001053_030 Hb_000336_140 Hb_000336_140 Hb_000009_580--Hb_000336_140 Hb_002073_040--Hb_000059_040 Hb_002505_040 Hb_002505_040 Hb_002073_040--Hb_002505_040 Hb_000009_590 Hb_000009_590 Hb_002073_040--Hb_000009_590 Hb_004129_130 Hb_004129_130 Hb_002073_040--Hb_004129_130 Hb_029866_130 Hb_029866_130 Hb_002073_040--Hb_029866_130 Hb_000009_550 Hb_000009_550 Hb_002073_040--Hb_000009_550 Hb_000059_040--Hb_002505_040 Hb_000059_040--Hb_000009_590 Hb_000059_040--Hb_004586_190 Hb_006588_090 Hb_006588_090 Hb_000059_040--Hb_006588_090 Hb_000237_080 Hb_000237_080 Hb_001318_030--Hb_000237_080 Hb_004032_270 Hb_004032_270 Hb_001318_030--Hb_004032_270 Hb_012807_050 Hb_012807_050 Hb_001318_030--Hb_012807_050 Hb_004128_060 Hb_004128_060 Hb_001318_030--Hb_004128_060 Hb_009838_050 Hb_009838_050 Hb_001318_030--Hb_009838_050 Hb_000976_150 Hb_000976_150 Hb_001318_030--Hb_000976_150 Hb_010407_070 Hb_010407_070 Hb_026698_010--Hb_010407_070 Hb_004225_180 Hb_004225_180 Hb_026698_010--Hb_004225_180 Hb_000599_140 Hb_000599_140 Hb_026698_010--Hb_000599_140 Hb_017987_070 Hb_017987_070 Hb_026698_010--Hb_017987_070 Hb_000457_170 Hb_000457_170 Hb_026698_010--Hb_000457_170 Hb_004607_150 Hb_004607_150 Hb_026698_010--Hb_004607_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0803555 0.21055 0.0185386 0 0.0959122 0.174336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0566761 0.133715 0.163058 0.0359314 0

CAGE analysis