Hb_004129_130

Information

Type -
Description -
Location Contig4129: 95551-98010
Sequence    

Annotation

kegg
ID rcu:RCOM_0539380
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002525881.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID O81028
description Pentatricopeptide repeat-containing protein At2g26790, mitochondrial OS=Arabidopsis thaliana GN=At2g26790 PE=3 SV=1
trembl
ID B9SIR2
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0539380 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004129_130 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_002904_030 0.0994353936 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420 [Jatropha curcas]
3 Hb_004734_060 0.1043255014 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
4 Hb_023827_040 0.1057913956 - - PREDICTED: methyl-CpG-binding domain-containing protein 11-like [Jatropha curcas]
5 Hb_001516_100 0.1068387298 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
6 Hb_001584_170 0.1093154373 - - neutral/alkaline invertase [Manihot esculenta]
7 Hb_001274_020 0.1096027694 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]
8 Hb_001318_030 0.1098219414 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
9 Hb_005839_120 0.1100000072 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
10 Hb_005307_030 0.1108279187 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
11 Hb_000500_040 0.1127971444 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001141_330 0.1128662013 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
13 Hb_011161_010 0.1133345185 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 isoform X1 [Jatropha curcas]
14 Hb_012395_220 0.1151125886 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
15 Hb_000977_070 0.1151880979 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
16 Hb_012807_050 0.1172186506 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
17 Hb_001584_160 0.1176272553 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g56570 [Jatropha curcas]
18 Hb_000953_010 0.1182407712 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
19 Hb_042038_020 0.1217327577 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
20 Hb_002810_020 0.1227103968 - - PREDICTED: pentatricopeptide repeat-containing protein At1g25360 [Jatropha curcas]

Gene co-expression network

sample Hb_004129_130 Hb_004129_130 Hb_002904_030 Hb_002904_030 Hb_004129_130--Hb_002904_030 Hb_004734_060 Hb_004734_060 Hb_004129_130--Hb_004734_060 Hb_023827_040 Hb_023827_040 Hb_004129_130--Hb_023827_040 Hb_001516_100 Hb_001516_100 Hb_004129_130--Hb_001516_100 Hb_001584_170 Hb_001584_170 Hb_004129_130--Hb_001584_170 Hb_001274_020 Hb_001274_020 Hb_004129_130--Hb_001274_020 Hb_005307_030 Hb_005307_030 Hb_002904_030--Hb_005307_030 Hb_002904_030--Hb_001516_100 Hb_002904_030--Hb_023827_040 Hb_001318_030 Hb_001318_030 Hb_002904_030--Hb_001318_030 Hb_001769_010 Hb_001769_010 Hb_002904_030--Hb_001769_010 Hb_033152_080 Hb_033152_080 Hb_004734_060--Hb_033152_080 Hb_000803_190 Hb_000803_190 Hb_004734_060--Hb_000803_190 Hb_000953_010 Hb_000953_010 Hb_004734_060--Hb_000953_010 Hb_000209_020 Hb_000209_020 Hb_004734_060--Hb_000209_020 Hb_004734_060--Hb_001516_100 Hb_000184_130 Hb_000184_130 Hb_004734_060--Hb_000184_130 Hb_076693_020 Hb_076693_020 Hb_023827_040--Hb_076693_020 Hb_045793_010 Hb_045793_010 Hb_023827_040--Hb_045793_010 Hb_000865_080 Hb_000865_080 Hb_023827_040--Hb_000865_080 Hb_000025_360 Hb_000025_360 Hb_023827_040--Hb_000025_360 Hb_000224_060 Hb_000224_060 Hb_023827_040--Hb_000224_060 Hb_001610_110 Hb_001610_110 Hb_023827_040--Hb_001610_110 Hb_001516_100--Hb_000953_010 Hb_000836_360 Hb_000836_360 Hb_001516_100--Hb_000836_360 Hb_000808_180 Hb_000808_180 Hb_001516_100--Hb_000808_180 Hb_000977_070 Hb_000977_070 Hb_001516_100--Hb_000977_070 Hb_001516_100--Hb_033152_080 Hb_003878_140 Hb_003878_140 Hb_001584_170--Hb_003878_140 Hb_001584_170--Hb_000865_080 Hb_001584_170--Hb_004734_060 Hb_001584_170--Hb_000224_060 Hb_012395_160 Hb_012395_160 Hb_001584_170--Hb_012395_160 Hb_002977_010 Hb_002977_010 Hb_001584_170--Hb_002977_010 Hb_015401_020 Hb_015401_020 Hb_001274_020--Hb_015401_020 Hb_000500_040 Hb_000500_040 Hb_001274_020--Hb_000500_040 Hb_000138_040 Hb_000138_040 Hb_001274_020--Hb_000138_040 Hb_001274_020--Hb_001516_100 Hb_001274_020--Hb_000836_360 Hb_001274_020--Hb_000808_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.29397 5.28955 0.588686 0.757222 3.84089 5.98742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.01384 4.41441 3.72098 2.10157 0.811719

CAGE analysis