Hb_002073_040

Information

Type -
Description -
Location Contig2073: 32904-34151
Sequence    

Annotation

kegg
ID rcu:RCOM_0829230
description hypothetical protein
nr
ID XP_002520646.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9FLS0
description F-box protein At5g07610 OS=Arabidopsis thaliana GN=At5g07610 PE=2 SV=1
trembl
ID B9S3S7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0829230 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002073_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000059_040 0.1277757794 - - Uncharacterized protein TCM_020504 [Theobroma cacao]
3 Hb_002505_040 0.1328035824 - - -
4 Hb_000009_590 0.1453946788 - - PREDICTED: prolyl endopeptidase-like isoform X1 [Jatropha curcas]
5 Hb_004129_130 0.1557717114 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_029866_130 0.169292802 - - hypothetical protein JCGZ_00035 [Jatropha curcas]
7 Hb_000009_550 0.1730370113 - - hypothetical protein RCOM_0603640 [Ricinus communis]
8 Hb_002904_030 0.1737516283 - - PREDICTED: pentatricopeptide repeat-containing protein At1g71420 [Jatropha curcas]
9 Hb_001318_030 0.1778075824 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
10 Hb_004586_190 0.1782988265 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
11 Hb_001584_170 0.1794879662 - - neutral/alkaline invertase [Manihot esculenta]
12 Hb_005839_120 0.1799573174 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
13 Hb_001817_180 0.1819224978 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
14 Hb_006316_070 0.1823241107 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
15 Hb_009838_050 0.1826707467 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000009_580 0.18288323 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
17 Hb_002890_030 0.1830915938 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
18 Hb_000173_480 0.1844813137 - - PREDICTED: calcium-binding protein 39 [Jatropha curcas]
19 Hb_000352_090 0.1855035224 - - PREDICTED: syntaxin-22-like isoform X1 [Jatropha curcas]
20 Hb_006816_320 0.1855320488 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 16-like [Jatropha curcas]

Gene co-expression network

sample Hb_002073_040 Hb_002073_040 Hb_000059_040 Hb_000059_040 Hb_002073_040--Hb_000059_040 Hb_002505_040 Hb_002505_040 Hb_002073_040--Hb_002505_040 Hb_000009_590 Hb_000009_590 Hb_002073_040--Hb_000009_590 Hb_004129_130 Hb_004129_130 Hb_002073_040--Hb_004129_130 Hb_029866_130 Hb_029866_130 Hb_002073_040--Hb_029866_130 Hb_000009_550 Hb_000009_550 Hb_002073_040--Hb_000009_550 Hb_000059_040--Hb_002505_040 Hb_000059_040--Hb_000009_590 Hb_004586_190 Hb_004586_190 Hb_000059_040--Hb_004586_190 Hb_010315_050 Hb_010315_050 Hb_000059_040--Hb_010315_050 Hb_006588_090 Hb_006588_090 Hb_000059_040--Hb_006588_090 Hb_002505_040--Hb_000009_590 Hb_000008_330 Hb_000008_330 Hb_002505_040--Hb_000008_330 Hb_007803_010 Hb_007803_010 Hb_002505_040--Hb_007803_010 Hb_003073_200 Hb_003073_200 Hb_002505_040--Hb_003073_200 Hb_000009_590--Hb_003073_200 Hb_000041_220 Hb_000041_220 Hb_000009_590--Hb_000041_220 Hb_006816_320 Hb_006816_320 Hb_000009_590--Hb_006816_320 Hb_000236_300 Hb_000236_300 Hb_000009_590--Hb_000236_300 Hb_000398_190 Hb_000398_190 Hb_000009_590--Hb_000398_190 Hb_002904_030 Hb_002904_030 Hb_004129_130--Hb_002904_030 Hb_004734_060 Hb_004734_060 Hb_004129_130--Hb_004734_060 Hb_023827_040 Hb_023827_040 Hb_004129_130--Hb_023827_040 Hb_001516_100 Hb_001516_100 Hb_004129_130--Hb_001516_100 Hb_001584_170 Hb_001584_170 Hb_004129_130--Hb_001584_170 Hb_001274_020 Hb_001274_020 Hb_004129_130--Hb_001274_020 Hb_000152_890 Hb_000152_890 Hb_029866_130--Hb_000152_890 Hb_001057_010 Hb_001057_010 Hb_029866_130--Hb_001057_010 Hb_006478_110 Hb_006478_110 Hb_029866_130--Hb_006478_110 Hb_001454_060 Hb_001454_060 Hb_029866_130--Hb_001454_060 Hb_000413_130 Hb_000413_130 Hb_029866_130--Hb_000413_130 Hb_005214_160 Hb_005214_160 Hb_029866_130--Hb_005214_160 Hb_029584_080 Hb_029584_080 Hb_000009_550--Hb_029584_080 Hb_010710_110 Hb_010710_110 Hb_000009_550--Hb_010710_110 Hb_000923_020 Hb_000923_020 Hb_000009_550--Hb_000923_020 Hb_005307_030 Hb_005307_030 Hb_000009_550--Hb_005307_030 Hb_003097_150 Hb_003097_150 Hb_000009_550--Hb_003097_150 Hb_015941_030 Hb_015941_030 Hb_000009_550--Hb_015941_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.25194 4.68741 0.269949 0.451797 4.41908 5.19124
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.66485 4.05073 1.81659 0.975354 0.126333

CAGE analysis